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Revision 1.73 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Jul 13 20:13:55 2016 UTC (3 years, 6 months ago) by olson
Branch: MAIN
CVS Tags: HEAD
Changes since 1.72: +8 -0 lines
Diff to previous 1.72
Add more pattyfam support.

Revision 1.72 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Jul 12 21:30:31 2016 UTC (3 years, 6 months ago) by olson
Branch: MAIN
Changes since 1.71: +72 -15 lines
Diff to previous 1.71
Compare regions update.

Revision 1.71 - (view) (download) (as text) (annotate) - [select for diffs]
Sat Aug 30 19:46:40 2014 UTC (5 years, 4 months ago) by golsen
Branch: MAIN
CVS Tags: rast_rel_2014_0912
Changes since 1.70: +9 -6 lines
Diff to previous 1.70
This is probably moot, but it was meant to filter out some undef values
that have shown up in my error log.

Revision 1.70 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Aug 4 21:36:19 2014 UTC (5 years, 5 months ago) by olson
Branch: MAIN
Changes since 1.69: +2 -0 lines
Diff to previous 1.69
Add export seqs as genbank

Revision 1.69 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Feb 14 21:51:55 2014 UTC (5 years, 11 months ago) by olson
Branch: MAIN
CVS Tags: rast_rel_2014_0729
Changes since 1.68: +37 -3 lines
Diff to previous 1.68
Add support for kmer-based pin detection.

Revision 1.68 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Nov 15 05:44:56 2013 UTC (6 years, 2 months ago) by seaver
Branch: MAIN
Changes since 1.67: +1 -1 lines
Diff to previous 1.67
Updated default preference of 4 genomes in CompareRegion to 15 genomes to enable plant genomes to show bacterial genomes in CompareRegions

Revision 1.67 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Aug 9 09:12:00 2013 UTC (6 years, 5 months ago) by redwards
Branch: MAIN
Changes since 1.66: +3 -2 lines
Diff to previous 1.66
removing an error for undefined db master when not running with log ins

Revision 1.66 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Sep 19 17:07:29 2011 UTC (8 years, 4 months ago) by olson
Branch: MAIN
CVS Tags: mgrast_dev_10262011, mgrast_dev_12152011, mgrast_release_3_1_2, mgrast_version_3_2, mobedac_release_05302012, rast_rel_2011_0928
Changes since 1.65: +5 -2 lines
Diff to previous 1.65
Add "collapse identical tax-id" option to compared region display.

Revision 1.65 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Jun 30 19:56:14 2011 UTC (8 years, 6 months ago) by parrello
Branch: MAIN
CVS Tags: mgrast_dev_08022011, mgrast_dev_08112011, mgrast_release_3_1_1
Changes since 1.64: +1 -0 lines
Diff to previous 1.64
Changed to new annotation security model.

Revision 1.64 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Jun 30 19:42:03 2011 UTC (8 years, 6 months ago) by parrello
Branch: MAIN
Changes since 1.63: +2 -2 lines
Diff to previous 1.63
Changed to new annotation security model.

Revision 1.63 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Jun 6 20:56:15 2011 UTC (8 years, 7 months ago) by olson
Branch: MAIN
CVS Tags: mgrast_dev_06072011, mgrast_release_3_1_0
Changes since 1.62: +3 -3 lines
Diff to previous 1.62
Doh, fix parens

Revision 1.62 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Jun 6 20:38:23 2011 UTC (8 years, 7 months ago) by olson
Branch: MAIN
Changes since 1.61: +3 -1 lines
Diff to previous 1.61
Make the default setting of collapse_close_genomes configurable via FIG_Config.

Revision 1.61 - (view) (download) (as text) (annotate) - [select for diffs]
Tue May 3 18:03:20 2011 UTC (8 years, 8 months ago) by overbeek
Branch: MAIN
CVS Tags: mgrast_dev_05262011
Changes since 1.60: +1 -1 lines
Diff to previous 1.60
default to coallpsed compare regions

Revision 1.60 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Sep 21 13:24:47 2010 UTC (9 years, 3 months ago) by paczian
Branch: MAIN
CVS Tags: mgrast_dev_02212011, mgrast_dev_02222011, mgrast_dev_03052011, mgrast_dev_03252011, mgrast_dev_03312011, mgrast_dev_04012011, mgrast_dev_04052011, mgrast_dev_04082011, mgrast_dev_04132011, mgrast_release_3_0, mgrast_release_3_0_1, mgrast_release_3_0_2, mgrast_release_3_0_3, mgrast_release_3_0_4, myrast_33, rast_rel_2010_0928, rast_rel_2010_1206, rast_rel_2011_0119
Changes since 1.59: +5 -0 lines
Diff to previous 1.59
if multiple pegs were passed, they will now be remembered

Revision 1.59 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Sep 7 14:36:15 2010 UTC (9 years, 4 months ago) by paczian
Branch: MAIN
Changes since 1.58: +41 -0 lines
Diff to previous 1.58
added jumping over contig borders

Revision 1.58 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Sep 3 11:06:33 2010 UTC (9 years, 4 months ago) by paczian
Branch: MAIN
Changes since 1.57: +6 -6 lines
Diff to previous 1.57
walking buttons will now submit the region display form
annotation page will now respect region_size, number_of_regions, sim_cutoff and color_sim_cutoff parameters for displaying the compared region

Revision 1.57 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Aug 2 11:30:15 2010 UTC (9 years, 5 months ago) by paczian
Branch: MAIN
CVS Tags: rast_rel_2010_0827
Changes since 1.56: +0 -6 lines
Diff to previous 1.56
removed correction from last patch

Revision 1.56 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Aug 2 10:59:08 2010 UTC (9 years, 5 months ago) by paczian
Branch: MAIN
Changes since 1.55: +6 -0 lines
Diff to previous 1.55
fixed behavior of step pegs at the beginning of a contig

Revision 1.55 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Aug 2 10:54:12 2010 UTC (9 years, 5 months ago) by paczian
Branch: MAIN
Changes since 1.54: +182 -132 lines
Diff to previous 1.54
reworked the step_pegs function

Revision 1.54 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Apr 20 21:39:16 2010 UTC (9 years, 9 months ago) by olson
Branch: MAIN
CVS Tags: rast_rel_2010_0526
Changes since 1.53: +6 -6 lines
Diff to previous 1.53
Factor out another database lookup.

Revision 1.53 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Sep 30 07:53:35 2009 UTC (10 years, 3 months ago) by paczian
Branch: MAIN
CVS Tags: rast_rel_2010_0118
Changes since 1.52: +46 -5 lines
Diff to previous 1.52
fixed bug that made the update selected button disappear

Revision 1.52 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Sep 18 09:11:22 2009 UTC (10 years, 4 months ago) by paczian
Branch: MAIN
CVS Tags: rast_rel_2009_0925
Changes since 1.51: +4 -0 lines
Diff to previous 1.51
added shape for binding sites

Revision 1.51 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Sep 2 09:41:00 2009 UTC (10 years, 4 months ago) by paczian
Branch: MAIN
Changes since 1.50: +13 -3 lines
Diff to previous 1.50
fixed size information

Revision 1.50 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Aug 17 21:24:50 2009 UTC (10 years, 5 months ago) by dsouza
Branch: MAIN
Changes since 1.49: +18 -5 lines
Diff to previous 1.49
Revert to before blat was introduced.

Revision 1.49 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Aug 13 20:35:05 2009 UTC (10 years, 5 months ago) by dsouza
Branch: MAIN
Changes since 1.48: +5 -18 lines
Diff to previous 1.48
Removed fast color option from form.

Revision 1.48 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Aug 12 18:53:56 2009 UTC (10 years, 5 months ago) by overbeek
Branch: MAIN
Changes since 1.47: +2 -2 lines
Diff to previous 1.47
change default to faster slower

Revision 1.47 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Jul 9 15:14:50 2009 UTC (10 years, 6 months ago) by paczian
Branch: MAIN
CVS Tags: rast_rel_2009_07_09
Changes since 1.46: +46 -5 lines
Diff to previous 1.46
added navigation buttons to move a full window upstream/downstream

Revision 1.46 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Jun 24 21:42:42 2009 UTC (10 years, 6 months ago) by dsouza
Branch: MAIN
Changes since 1.45: +5 -5 lines
Diff to previous 1.45
Changed default sort option for region order display

Revision 1.45 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Jun 24 19:54:19 2009 UTC (10 years, 6 months ago) by dsouza
Branch: MAIN
Changes since 1.44: +10 -3 lines
Diff to previous 1.44
Added option for user to sort region display order on similarity of pinned peg to input peg

Revision 1.44 - (view) (download) (as text) (annotate) - [select for diffs]
Mon May 18 15:26:00 2009 UTC (10 years, 8 months ago) by paczian
Branch: MAIN
CVS Tags: rast_rel_2009_05_18
Changes since 1.43: +1 -1 lines
Diff to previous 1.43
added check/uncheck all button

Revision 1.43 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Apr 23 14:43:48 2009 UTC (10 years, 8 months ago) by paczian
Branch: MAIN
Changes since 1.42: +19 -5 lines
Diff to previous 1.42
moved genome selection to compared regions image

Revision 1.42 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Apr 8 19:30:30 2009 UTC (10 years, 9 months ago) by dsouza
Branch: MAIN
Changes since 1.41: +6 -0 lines
Diff to previous 1.41
Added contig and size information in feature popup

Revision 1.41 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Mar 27 16:28:38 2009 UTC (10 years, 9 months ago) by olson
Branch: MAIN
Changes since 1.40: +1 -1 lines
Diff to previous 1.40
Debug statement was crashing on system that does not have access to web app db.

Revision 1.40 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Mar 27 10:53:56 2009 UTC (10 years, 9 months ago) by paczian
Branch: MAIN
Changes since 1.39: +12 -3 lines
Diff to previous 1.39
added option for annotators to show alias information

Revision 1.39 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Mar 25 18:00:13 2009 UTC (10 years, 9 months ago) by paczian
Branch: MAIN
CVS Tags: rast_rel_2009_03_26
Changes since 1.38: +1 -0 lines
Diff to previous 1.38
fixed display of subsystems

Revision 1.38 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Mar 17 21:26:39 2009 UTC (10 years, 10 months ago) by dsouza
Branch: MAIN
Changes since 1.37: +7 -7 lines
Diff to previous 1.37
Added align form for protein/dna sequences as welll as specified up/downstream DNA segments

Revision 1.37 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Mar 9 17:14:41 2009 UTC (10 years, 10 months ago) by dsouza
Branch: MAIN
Changes since 1.36: +273 -7 lines
Diff to previous 1.36
Added region selection tab and sequence download/view tab

Revision 1.36 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Feb 19 09:54:33 2009 UTC (10 years, 11 months ago) by paczian
Branch: MAIN
Changes since 1.35: +10 -11 lines
Diff to previous 1.35
re-added annotate clusters button

Revision 1.35 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Feb 17 19:43:09 2009 UTC (10 years, 11 months ago) by dsouza
Branch: MAIN
Changes since 1.34: +108 -9 lines
Diff to previous 1.34
Added next and previous buttons to compared regions

Revision 1.34 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Feb 5 16:02:02 2009 UTC (10 years, 11 months ago) by paczian
Branch: MAIN
Changes since 1.33: +85 -48 lines
Diff to previous 1.33
added preference detection
added option for evidence codes and aliases for annotators

Revision 1.33 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Feb 5 07:35:09 2009 UTC (10 years, 11 months ago) by parrello
Branch: MAIN
Changes since 1.32: +7 -7 lines
Diff to previous 1.32
Fixed some bad URLs.

Revision 1.32 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Dec 22 09:58:14 2008 UTC (11 years ago) by paczian
Branch: MAIN
CVS Tags: rast_rel_2009_02_05
Changes since 1.31: +2 -2 lines
Diff to previous 1.31
now displaying full peg id in tabular view

Revision 1.31 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Nov 6 11:10:55 2008 UTC (11 years, 2 months ago) by paczian
Branch: MAIN
CVS Tags: mgrast_rel_2008_1110, mgrast_rel_2008_1110_v2, rast_rel_2008_11_24, rast_rel_2008_12_18
Changes since 1.30: +3 -24 lines
Diff to previous 1.30
added support for FIGM

Revision 1.30 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Oct 20 10:19:12 2008 UTC (11 years, 3 months ago) by paczian
Branch: MAIN
CVS Tags: rast_rel_2008_10_29
Changes since 1.29: +4 -4 lines
Diff to previous 1.29
switched onclick of items to href

Revision 1.29 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Oct 1 14:41:00 2008 UTC (11 years, 3 months ago) by paczian
Branch: MAIN
CVS Tags: rast_rel_2008_10_09
Changes since 1.28: +22 -1 lines
Diff to previous 1.28
if the user has a preferred rast org and that rast org is available on this server and the current organism is not a rast organism, the preferred rast org will be included in the region display

Revision 1.28 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Sep 30 13:25:43 2008 UTC (11 years, 3 months ago) by paczian
Branch: MAIN
CVS Tags: rast_rel_2008_09_30
Changes since 1.27: +6 -2 lines
Diff to previous 1.27
now works with FIGV correctly
enabled ChromosomalClusters for RAST
fixed quoting error in buttons of ChromosomalClusters

Revision 1.27 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Sep 10 11:58:00 2008 UTC (11 years, 4 months ago) by paczian
Branch: MAIN
CVS Tags: mgrast_rel_2008_0625, mgrast_rel_2008_0917, mgrast_rel_2008_0919, mgrast_rel_2008_0923, mgrast_rel_2008_0924, rast_2008_0924, rast_rel_2008_09_29, rast_release_2008_09_29
Changes since 1.26: +4 -2 lines
Diff to previous 1.26
cluster annotation button is now checking for anno-3 mode

Revision 1.26 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Sep 3 21:01:19 2008 UTC (11 years, 4 months ago) by parrello
Branch: MAIN
Changes since 1.25: +8 -8 lines
Diff to previous 1.25
Converted URLs.

Revision 1.25 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Sep 3 15:31:00 2008 UTC (11 years, 4 months ago) by dsouza
Branch: MAIN
Changes since 1.24: +10 -0 lines
Diff to previous 1.24
Added subsystem list in popup text for features in image

Revision 1.24 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Aug 22 17:06:16 2008 UTC (11 years, 4 months ago) by dsouza
Branch: MAIN
CVS Tags: mgrast_rel_2008_0806
Changes since 1.23: +12 -27 lines
Diff to previous 1.23
Changed sorting order in tabular view

Revision 1.23 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Aug 7 18:51:55 2008 UTC (11 years, 5 months ago) by paczian
Branch: MAIN
CVS Tags: rast_rel_2008_08_07
Changes since 1.22: +1 -1 lines
Diff to previous 1.22
removed button to commentary page

Revision 1.22 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Jul 15 19:00:38 2008 UTC (11 years, 6 months ago) by paczian
Branch: MAIN
Changes since 1.21: +9 -3 lines
Diff to previous 1.21
added button for chromosomal clusters page

Revision 1.21 - (view) (download) (as text) (annotate) - [select for diffs]
Thu May 15 20:11:39 2008 UTC (11 years, 8 months ago) by paczian
Branch: MAIN
CVS Tags: rast_rel_2008_06_16, rast_rel_2008_06_18, rast_rel_2008_07_21
Changes since 1.20: +3 -3 lines
Diff to previous 1.20
fixed compared region table
compared region table now has cluster button

Revision 1.20 - (view) (download) (as text) (annotate) - [select for diffs]
Mon May 12 22:05:44 2008 UTC (11 years, 8 months ago) by dsouza
Branch: MAIN
Changes since 1.19: +10 -5 lines
Diff to previous 1.19
Added link to new homologs in clusters page in table.

Revision 1.19 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Apr 29 21:04:48 2008 UTC (11 years, 8 months ago) by parrello
Branch: MAIN
Changes since 1.18: +1 -1 lines
Diff to previous 1.18
Converted for NMPDR compatability.

Revision 1.18 - (view) (download) (as text) (annotate) - [select for diffs]
Sun Mar 23 16:54:33 2008 UTC (11 years, 9 months ago) by parrello
Branch: MAIN
CVS Tags: rast_rel_2008_04_23
Changes since 1.17: +9 -7 lines
Diff to previous 1.17
Added tracing.

Revision 1.17 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Mar 21 20:10:06 2008 UTC (11 years, 10 months ago) by paczian
Branch: MAIN
Changes since 1.16: +1 -1 lines
Diff to previous 1.16
made highlight color a little nicer to the eye

Revision 1.16 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Feb 26 17:45:59 2008 UTC (11 years, 10 months ago) by bartels
Branch: MAIN
Changes since 1.15: +16 -2 lines
Diff to previous 1.15
added add_features

Revision 1.15 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Feb 19 23:02:27 2008 UTC (11 years, 11 months ago) by dsouza
Branch: MAIN
Changes since 1.14: +42 -14 lines
Diff to previous 1.14
Fixed cgi parameter handling -- $fast_color was not being handled correctly.

Revision 1.14 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Feb 15 22:20:28 2008 UTC (11 years, 11 months ago) by dsouza
Branch: MAIN
Changes since 1.13: +46 -25 lines
Diff to previous 1.13
Added support for seed user vvariable.

Revision 1.13 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Feb 6 18:29:17 2008 UTC (11 years, 11 months ago) by dsouza
Branch: MAIN
Changes since 1.12: +19 -6 lines
Diff to previous 1.12
Bug fix in selected genomes.

Revision 1.12 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Feb 5 21:02:10 2008 UTC (11 years, 11 months ago) by dsouza
Branch: MAIN
Changes since 1.11: +93 -7 lines
Diff to previous 1.11
1. Added FigFam name in image popup for PEGs in FigFams.
2. Added support for user selecting set of genomes for display.

Revision 1.11 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Jan 15 16:22:05 2008 UTC (12 years ago) by dsouza
Branch: MAIN
Changes since 1.10: +38 -22 lines
Diff to previous 1.10
Fixed bug regarding background shading of functionally coupled PEGs.

Revision 1.10 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Jan 14 16:35:07 2008 UTC (12 years ago) by dsouza
Branch: MAIN
Changes since 1.9: +60 -36 lines
Diff to previous 1.9
Modified to handle multiple input PEGs. In this case the chromosomal
regions for these PEGs are displayed, without messing around with
compared regions or pinned regions.

Revision 1.9 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Dec 21 17:06:56 2007 UTC (12 years, 1 month ago) by dsouza
Branch: MAIN
Changes since 1.8: +165 -107 lines
Diff to previous 1.8
Changed input form -- display and formatting.
Added columns for protein length, strand, subsytems etc. in tabular view.

Revision 1.8 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Dec 13 17:42:13 2007 UTC (12 years, 1 month ago) by dsouza
Branch: MAIN
Changes since 1.7: +33 -7 lines
Diff to previous 1.7
Changed text in form controlling display.
Changed text in table (Group to Set).
Sorted features in table, and highlighted input feature.

Revision 1.7 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Dec 12 21:52:29 2007 UTC (12 years, 1 month ago) by paczian
Branch: MAIN
Changes since 1.6: +3 -1 lines
Diff to previous 1.6
corrected predefined organism filter from org id to org name

Revision 1.6 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Dec 3 22:31:07 2007 UTC (12 years, 1 month ago) by paczian
Branch: MAIN
Changes since 1.5: +7 -6 lines
Diff to previous 1.5
changed PEG to CDS
moved Similarity vs PCH option to advanced mode

Revision 1.5 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Dec 3 19:54:57 2007 UTC (12 years, 1 month ago) by paczian
Branch: MAIN
Changes since 1.4: +1 -1 lines
Diff to previous 1.4
changed default sort order to phylogenetic_distance (this way the selected genome is at the top)

Revision 1.4 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Nov 30 21:56:33 2007 UTC (12 years, 1 month ago) by paczian
Branch: MAIN
Changes since 1.3: +5 -0 lines
Diff to previous 1.3
added do not show orfs fix

Revision 1.3 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Nov 30 20:36:40 2007 UTC (12 years, 1 month ago) by dsouza
Branch: MAIN
Changes since 1.2: +2 -0 lines
Diff to previous 1.2
Fixed handling of 'control_form' variable.

Revision 1.2 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Nov 30 19:26:28 2007 UTC (12 years, 1 month ago) by paczian
Branch: MAIN
Changes since 1.1: +86 -17 lines
Diff to previous 1.1
fixed colors and cgi parameters

Revision 1.1 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Nov 30 17:00:25 2007 UTC (12 years, 1 month ago) by dsouza
Branch: MAIN
Web component which creates the 'compared regions' type images, the tabular
data for the features displayed, and the form that controls the display.

It uses the module PinnedRegions.pm in FigKernelPackages to create the list
of pinned PEGs (based on similarity or PCH pins) and get all the feature
data for their contig regions required to create the image.

Mark D'Souza, 2007-11-30

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