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Revision 1.27 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Aug 17 19:26:54 2009 UTC (10 years, 5 months ago) by olson
Branch: MAIN
CVS Tags: mgrast_dev_02212011, mgrast_dev_02222011, mgrast_dev_03052011, mgrast_dev_03252011, mgrast_dev_03312011, mgrast_dev_04012011, mgrast_dev_04052011, mgrast_dev_04082011, mgrast_dev_04132011, mgrast_dev_05262011, mgrast_dev_06072011, mgrast_dev_08022011, mgrast_dev_08112011, mgrast_dev_10262011, mgrast_dev_12152011, mgrast_release_3_0, mgrast_release_3_0_1, mgrast_release_3_0_2, mgrast_release_3_0_3, mgrast_release_3_0_4, mgrast_release_3_1_0, mgrast_release_3_1_1, mgrast_release_3_1_2, mgrast_version_3_2, mobedac_release_05302012, myrast_33, rast_rel_2009_0925, rast_rel_2010_0118, rast_rel_2010_0526, rast_rel_2010_0827, rast_rel_2010_0928, rast_rel_2010_1206, rast_rel_2011_0119, rast_rel_2011_0928
Changes since 1.26: +2 -2 lines
Diff to previous 1.26
Use get_jobs_for_user_fast_no_status instead of get_jobs_for_user_fast.

Revision 1.26 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Jan 19 21:59:49 2009 UTC (11 years ago) by parrello
Branch: MAIN
CVS Tags: rast_rel_2009_02_05, rast_rel_2009_03_26, rast_rel_2009_05_18, rast_rel_2009_07_09
Changes since 1.25: +12 -6 lines
Diff to previous 1.25
Fixed to return the FIG object instead of undef when a nonexistent genome ID is passed in. The undef has been causing havoc in the NMPDR for months.

Revision 1.25 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Dec 22 10:00:03 2008 UTC (11 years, 1 month ago) by paczian
Branch: MAIN
Changes since 1.24: +5 -7 lines
Diff to previous 1.24
undeffing id if it does not match an organism id
returning fig if no figv can be created

Revision 1.24 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Dec 15 11:15:03 2008 UTC (11 years, 1 month ago) by paczian
Branch: MAIN
CVS Tags: rast_rel_2008_12_18
Changes since 1.23: +2 -1 lines
Diff to previous 1.23
when an organism exists both private and public, the public one will now be chosen first

Revision 1.23 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Dec 12 10:14:37 2008 UTC (11 years, 1 month ago) by paczian
Branch: MAIN
Changes since 1.22: +4 -4 lines
Diff to previous 1.22
removed organism not found warning

Revision 1.22 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Dec 9 14:39:26 2008 UTC (11 years, 1 month ago) by paczian
Branch: MAIN
Changes since 1.21: +47 -49 lines
Diff to previous 1.21
removed duplicate invocations of data handler rast
made the usage more failsafe if rast database is incorrectly configured

Revision 1.21 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Dec 8 16:07:00 2008 UTC (11 years, 1 month ago) by paczian
Branch: MAIN
Changes since 1.20: +11 -4 lines
Diff to previous 1.20
added support for organism parameter to be an array

Revision 1.20 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Nov 24 09:20:00 2008 UTC (11 years, 1 month ago) by paczian
Branch: MAIN
CVS Tags: rast_rel_2008_11_24
Changes since 1.19: +26 -21 lines
Diff to previous 1.19
FIGM will now check for an organism indicator and include that organism

Revision 1.19 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Nov 20 15:46:15 2008 UTC (11 years, 2 months ago) by paczian
Branch: MAIN
Changes since 1.18: +4 -4 lines
Diff to previous 1.18
adjusted for Preferences to use view right
removed sorting of joblist
switched to use job_for_user_fast

Revision 1.18 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Nov 6 11:08:42 2008 UTC (11 years, 2 months ago) by paczian
Branch: MAIN
CVS Tags: mgrast_rel_2008_1110, mgrast_rel_2008_1110_v2
Changes since 1.17: +59 -1 lines
Diff to previous 1.17
added support for FIGM

Revision 1.17 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Oct 22 12:36:11 2008 UTC (11 years, 3 months ago) by paczian
Branch: MAIN
Changes since 1.16: +4 -2 lines
Diff to previous 1.16
fig object was not returned... fixed

Revision 1.16 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Oct 22 11:55:08 2008 UTC (11 years, 3 months ago) by paczian
Branch: MAIN
Changes since 1.15: +22 -19 lines
Diff to previous 1.15
updated for new mg-rast compliance, backward compatible to all but mg-rast

Revision 1.15 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Oct 20 12:19:05 2008 UTC (11 years, 3 months ago) by paczian
Branch: MAIN
Changes since 1.14: +36 -28 lines
Diff to previous 1.14
now checking whether rast is available before trying to get a master

Revision 1.14 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Sep 16 18:56:02 2008 UTC (11 years, 4 months ago) by parrello
Branch: MAIN
CVS Tags: mgrast_rel_2008_0625, mgrast_rel_2008_0917, mgrast_rel_2008_0919, mgrast_rel_2008_0923, mgrast_rel_2008_0924, rast_2008_0924, rast_rel_2008_09_29, rast_rel_2008_09_30, rast_rel_2008_10_09, rast_rel_2008_10_29, rast_release_2008_09_29
Changes since 1.13: +3 -1 lines
Diff to previous 1.13
Changed to turn on tracing before creating the WebApplication object.

Revision 1.13 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Jun 23 19:26:32 2008 UTC (11 years, 6 months ago) by paczian
Branch: MAIN
CVS Tags: mgrast_rel_2008_0806, rast_rel_2008_07_21, rast_rel_2008_08_07
Changes since 1.12: +13 -11 lines
Diff to previous 1.12
now also checking for public metagenomes (no need for rights)

Revision 1.12 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Apr 29 21:03:24 2008 UTC (11 years, 8 months ago) by parrello
Branch: MAIN
CVS Tags: rast_rel_2008_06_16, rast_rel_2008_06_18
Changes since 1.11: +16 -2 lines
Diff to previous 1.11
Added more documentation.

Revision 1.11 - (view) (download) (as text) (annotate) - [select for diffs]
Sun Mar 23 16:40:38 2008 UTC (11 years, 10 months ago) by parrello
Branch: MAIN
CVS Tags: rast_rel_2008_04_23
Changes since 1.10: +24 -11 lines
Diff to previous 1.10
Enhanced to allow use of a cookie to switch operating modes.

Revision 1.10 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Feb 21 19:22:17 2008 UTC (11 years, 11 months ago) by paarmann
Branch: MAIN
Changes since 1.9: +52 -41 lines
Diff to previous 1.9
now checks wether organism is in public seed, checks rights otherwise

Revision 1.9 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Feb 5 21:59:39 2008 UTC (11 years, 11 months ago) by parrello
Branch: MAIN
Changes since 1.8: +21 -2 lines
Diff to previous 1.8
Added TITLE clause for the wiki.

Revision 1.8 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Dec 6 15:00:16 2007 UTC (12 years, 1 month ago) by parrello
Branch: MAIN
Changes since 1.7: +50 -47 lines
Diff to previous 1.7
Changed to return an SFXlate when we are in nmpdr mode.

Revision 1.7 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Nov 12 18:31:33 2007 UTC (12 years, 2 months ago) by paarmann
Branch: MAIN
Changes since 1.6: +2 -2 lines
Diff to previous 1.6
catch undefined value in regexp

Revision 1.6 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Nov 5 17:01:35 2007 UTC (12 years, 2 months ago) by paarmann
Branch: MAIN
Changes since 1.5: +2 -24 lines
Diff to previous 1.5
removed POD documentation as hotfix for Bruce\'s documentation webpage

Revision 1.5 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Nov 2 16:32:50 2007 UTC (12 years, 2 months ago) by paarmann
Branch: MAIN
Changes since 1.4: +5 -2 lines
Diff to previous 1.4
fix: catching init with invalid id

Revision 1.4 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Nov 2 16:29:08 2007 UTC (12 years, 2 months ago) by paarmann
Branch: MAIN
Changes since 1.3: +2 -2 lines
Diff to previous 1.3
fix: passed wrong directory to figv

Revision 1.3 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Nov 2 16:24:00 2007 UTC (12 years, 2 months ago) by paarmann
Branch: MAIN
Changes since 1.2: +2 -2 lines
Diff to previous 1.2
fixed typo

Revision 1.2 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Nov 2 15:39:29 2007 UTC (12 years, 2 months ago) by paarmann
Branch: MAIN
Changes since 1.1: +68 -8 lines
Diff to previous 1.1
added functionality

Revision 1.1 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Oct 26 19:56:07 2007 UTC (12 years, 2 months ago) by paarmann
Branch: MAIN
initial version of DataHandler

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