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Index of /StandaloneTools

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File Rev. Age Author Last log entry
 Parent Directory        
Makefile  1.1  13 years  olson  added empty makefile
bielefeld_gff_to_seed.pl  1.2  11 years  overbeek  Fixed RNA size bug; improved path handling. -- /gdp
filter_tbl_overlaps.pl  1.1  12 years  parrello  Additional tools from Gordon for processing feature overlaps.
find_overlaps_standalone  1.1.1.1  13 years  olson  Initial import of gordon's utilities.
find_overlaps_standalone.pl  1.1  12 years  parrello  Additional tools from Gordon for processing feature overlaps.
find_peg_overlaps.pl  1.3  11 years  overbeek  Fixed counting bug. -- /gdp
get_fasta_for_tbl_entries.pl  1.1.1.1  13 years  olson  Initial import of gordon's utilities.
gff_to_tbl.pl  1.1  12 years  overbeek  Convert Bielefeld GFF format to SEED tbl format. -- /gdp
histo_seqs  1.4  11 years  overbeek  New "-by_chars" option plus minor cosmetic changes. -- /gdp
parse_refseq_without_FIG.pl  1.1  10 years  overbeek  Script to parse RefSeq files into SEED skeletons. -- /gdp
reformat_contigs  1.3  11 years  overbeek  Lowercased output sequence. (NOTE: there is now also a SEED version of this tool...
retitle_xterm.pl  1.3  10 years  overbeek  Minor cosmetic changes. -- /gdp
run-glimmer.pl  1.2  11 years  overbeek  Added capability to train from an external set of calls and contigs. -- /gdp
split_into_taxa.pl  1.1  10 years  overbeek  Script to split concatenated RefSeq files into taxa. -- /gdp
verify_genome_directory_standalone  1.1  12 years  olson  Rename file.

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