| Links to HEAD: | (view) (download) (as text) (annotate) |
| Links to rast_rel_2008_07_21: | (view) (download) (as text) (annotate) |
| Sticky Tag: |
Added code to pull the corresponding IDs into the feature keyword list.
Removed some obsolete comments.
Changed POD format for better compatability with Wiki. Added more tracing. Fixed a bug in the load for the PDB-Feature relationship.
Fixed an error in the CDD parsing.
Fixed an error in the alias handler.
Fixed load of diagram information.
Removed subsystem classification from a feature's keyword list.
Updated to use a more PPO-friendly database structure.
Fixed some bugs in the drug target load.
Added new tables for drug target docking results.
Added support for new fields required by the SEED Viewer.
Changed so that the functional assignment for non-PEG features is obtained from the annotations rather than the aliases.
Changed to get attributes in larger batches to improve performance.
Added taxonomy to search words. Fixed bust-up algorithm to preserve word order in assignments.
Converted to use the configured splitter for subsystem classifications.
Fixed some bugs in the special attribute support.
Added code to load Drug Target data. Fixed the keyword search code.
Changed to use the first alias as the primary functional assignment of non-peg features.
Fixed the subsystem classification code to use colon instead of space as a delimiter between levels.
Removed obsolete BBH load.
Changed the subsystem classification implementation so that we can reconstruct the correct hierarchy. Added new implementations for virulence and essentialiy properties.
Fixed a bad Put.
Put a better index on HasRoleInSubsystem.
Added a relationship between features and subsystems.
Moved NMPDR group into the Genome record. This insures that all of the information required to generate a popup menu of genomes is available without access to secondary tables.
Changed to include a copy of the functional assignment in the feature table.
Enhanced to sort genome IDs so that progress can be measured more accurately from the trace messages.
Fixed a bug in the handling of the gene file access code. How could this ever have worked?
Fixed to load subsystem classifications as a multiply-occurring field.
Fixed a duplicate table name.
Fixed a bug in the Family load.
Converted function name to a text field.
Added support for protein families.
Fixed a bug in the synonym group loader.
Fixed to sort the incoming external data tables to remove duplicates.
Fixed bugs in the diagram and features loads.
Fixed Feature and SynonymGroup loads to no longer count on the output sort to remove duplicate keys.
Changed to load usable subsystems instead of NMPDR subsystems.
Added tracing.
Removed some trace messages.
*** empty log message ***
Added more tracing.
Converted the PCH keys to integers.
*** empty log message ***
Fixed to close all the load files before attempting to load the database.
Converted the coupling ID from a hash-string to an ID-string and fixed some call signatures.
Added support for subsystem classifications.
*** empty log message ***
*** empty log message ***
Added support for mapped synonym IDs.
Fixed a comment.
Changed the subsystem load to reduce duplicate pegs in the cluster list.
Parent DirectoryFxied obsolete references to the {_erdb} member.
Fixed an error in the retrieval of the ERDB object.
Fixed a bug that was causing real annotations to be thrown out as duplicates.
Fixed to remove deleted features from spreadsheet cells.
Changed the annotation loader to read the flat file instead of the database.
Fixed to skip all access to FIG data when loadOnly is specified.
Updated the comments.
Fixed to only include NMPDR subsystems.
*** empty log message ***
Fixed subsystem load to recover if the subsystem is bad.
Added a relationship between Feature and Genome.
Fixed role subset bug.
Updated to remove taxon ID from the strain field.
*** empty log message ***
*** empty log message ***
Hacked in a switch to load only the main table of a load group.
Added better tracing to the property loader.
Converted to allow for a load-only mode that loads from pre-generated files.
Removed code for creating annotations out of functional assignments.
Fixed to properly load and test the "RoleOccursIn" relationship.
Moved the loading of reactions to the Reactions group. Fixed Reaction and Compound loaders to load all reactions and subsystems rather than only those used in subsystems. Fixed the Catalyzes loader to use the correct role ID.
Added the ability to load tables after generating the load files. Added code to create the new RoleEC table.
Added load methods for the new subsystem-related tables. Fixed annotations so the keys are unique without having to change the timestamps. Added load methods for the reaction/compound tables.
Fixed an error in the Coupling data loader.
Fixed to handle sources without descriptions.
Fixed the subsystem load.
Fixed to iterate through the genomes used instead of the genomes returned by "subsystem_genomes"
*** empty log message ***
Added more tracing.
Fixed to include external and internal aliases for features.
*** empty log message ***
*** empty log message ***
Added a limited (and hopefully faster) load mode for features.
Fixed error in feature ID generation.
Added support for additional table groups.
Added ability to load table groups and source information.
Fixed some bugs in the Genome load.
Fixed to work properly with the Unix PERL.
Added trace messages.
Added direct Sprout loading facility.
This form allows you to request diffs between any two revisions of this file. For each of the two "sides" of the diff, select a symbolic revision name using the selection box, or choose 'Use Text Field' and enter a numeric revision.
| MCS Webmaster | ViewVC Help |
| Powered by ViewVC 1.0.3 |