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Revision 1.94 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Sep 16 18:42:40 2008 UTC (11 years, 1 month ago) by parrello
Branch: MAIN
CVS Tags: mgrast_rel_2008_0917, mgrast_rel_2008_0919
Changes since 1.93: +3 -1 lines
Diff to previous 1.93
Changed to specify the configuration files when creating the keyword object.

Revision 1.93 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Sep 9 21:02:10 2008 UTC (11 years, 1 month ago) by parrello
Branch: MAIN
Changes since 1.92: +290 -57 lines
Diff to previous 1.92
Changes for v24 database.

Revision 1.92 - (view) (download) (as text) (annotate) - [select for diffs]
Sun Mar 23 16:33:15 2008 UTC (11 years, 6 months ago) by parrello
Branch: MAIN
CVS Tags: mgrast_rel_2008_0806, rast_rel_2008_04_23, rast_rel_2008_06_16, rast_rel_2008_06_18, rast_rel_2008_07_21, rast_rel_2008_08_07
Changes since 1.91: +15 -4 lines
Diff to previous 1.91
Added code to pull the corresponding IDs into the feature keyword list.

Revision 1.91 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Feb 14 19:15:18 2008 UTC (11 years, 8 months ago) by parrello
Branch: MAIN
Changes since 1.90: +0 -2 lines
Diff to previous 1.90
Removed some obsolete comments.

Revision 1.90 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Dec 6 14:53:50 2007 UTC (11 years, 10 months ago) by parrello
Branch: MAIN
Changes since 1.89: +30 -21 lines
Diff to previous 1.89
Changed POD format for better compatability with Wiki. Added more tracing. Fixed a bug in the load for the PDB-Feature relationship.

Revision 1.89 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Nov 5 23:43:57 2007 UTC (11 years, 11 months ago) by parrello
Branch: MAIN
Changes since 1.88: +14 -7 lines
Diff to previous 1.88
Fixed an error in the CDD parsing.

Revision 1.88 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Nov 5 22:52:06 2007 UTC (11 years, 11 months ago) by parrello
Branch: MAIN
Changes since 1.87: +7 -1 lines
Diff to previous 1.87
Fixed an error in the alias handler.

Revision 1.87 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Sep 10 18:16:54 2007 UTC (12 years, 1 month ago) by parrello
Branch: MAIN
Changes since 1.86: +8 -4 lines
Diff to previous 1.86
Fixed load of diagram information.

Revision 1.86 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Aug 20 23:30:35 2007 UTC (12 years, 1 month ago) by parrello
Branch: MAIN
Changes since 1.85: +3 -3 lines
Diff to previous 1.85
Removed subsystem classification from a feature's keyword list.

Revision 1.85 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Jul 16 19:59:33 2007 UTC (12 years, 3 months ago) by parrello
Branch: MAIN
Changes since 1.84: +202 -263 lines
Diff to previous 1.84
Updated to use a more PPO-friendly database structure.

Revision 1.84 - (view) (download) (as text) (annotate) - [select for diffs]
Thu May 17 23:44:51 2007 UTC (12 years, 5 months ago) by parrello
Branch: MAIN
Changes since 1.83: +15 -10 lines
Diff to previous 1.83
Fixed some bugs in the drug target load.

Revision 1.83 - (view) (download) (as text) (annotate) - [select for diffs]
Fri May 11 06:37:38 2007 UTC (12 years, 5 months ago) by parrello
Branch: MAIN
Changes since 1.82: +172 -229 lines
Diff to previous 1.82
Added new tables for drug target docking results.

Revision 1.82 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Apr 10 06:15:35 2007 UTC (12 years, 6 months ago) by parrello
Branch: MAIN
Changes since 1.81: +17 -7 lines
Diff to previous 1.81
Added support for new fields required by the SEED Viewer.

Revision 1.81 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Feb 21 13:21:42 2007 UTC (12 years, 7 months ago) by parrello
Branch: MAIN
Changes since 1.80: +6 -13 lines
Diff to previous 1.80
Changed so that the functional assignment for non-PEG features is obtained from the annotations rather than the aliases.

Revision 1.80 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Dec 20 20:04:58 2006 UTC (12 years, 9 months ago) by parrello
Branch: MAIN
Changes since 1.79: +64 -11 lines
Diff to previous 1.79
Changed to get attributes in larger batches to improve performance.

Revision 1.79 - (view) (download) (as text) (annotate) - [select for diffs]
Sat Nov 18 20:38:45 2006 UTC (12 years, 11 months ago) by parrello
Branch: MAIN
Changes since 1.78: +10 -4 lines
Diff to previous 1.78
Added taxonomy to search words. Fixed bust-up algorithm to preserve word order in assignments.

Revision 1.78 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Nov 15 12:15:30 2006 UTC (12 years, 11 months ago) by parrello
Branch: MAIN
Changes since 1.77: +1 -1 lines
Diff to previous 1.77
Converted to use the configured splitter for subsystem classifications.

Revision 1.77 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Nov 9 21:23:43 2006 UTC (12 years, 11 months ago) by parrello
Branch: MAIN
Changes since 1.76: +15 -12 lines
Diff to previous 1.76
Fixed some bugs in the special attribute support.

Revision 1.76 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Nov 3 00:43:22 2006 UTC (12 years, 11 months ago) by parrello
Branch: MAIN
Changes since 1.75: +351 -12 lines
Diff to previous 1.75
Added code to load Drug Target data. Fixed the keyword search code.

Revision 1.75 - (view) (download) (as text) (annotate) - [select for diffs]
Sun Oct 22 05:17:10 2006 UTC (12 years, 11 months ago) by parrello
Branch: MAIN
Changes since 1.74: +45 -12 lines
Diff to previous 1.74
Changed to use the first alias as the primary functional assignment of non-peg features.

Revision 1.74 - (view) (download) (as text) (annotate) - [select for diffs]
Sat Oct 21 06:44:17 2006 UTC (12 years, 11 months ago) by parrello
Branch: MAIN
Changes since 1.73: +1 -1 lines
Diff to previous 1.73
Fixed the subsystem classification code to use colon instead of space as a delimiter between levels.

Revision 1.73 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Oct 20 20:42:56 2006 UTC (12 years, 11 months ago) by parrello
Branch: MAIN
Changes since 1.72: +0 -72 lines
Diff to previous 1.72
Removed obsolete BBH load.

Revision 1.72 - (view) (download) (as text) (annotate) - [select for diffs]
Sat Oct 14 18:12:14 2006 UTC (13 years ago) by parrello
Branch: MAIN
Changes since 1.71: +49 -11 lines
Diff to previous 1.71
Changed the subsystem classification implementation so that we can reconstruct the correct hierarchy.
Added new implementations for virulence and essentialiy properties.

Revision 1.71 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Sep 27 13:25:53 2006 UTC (13 years ago) by parrello
Branch: MAIN
Changes since 1.70: +1 -1 lines
Diff to previous 1.70
Fixed a bad Put.

Revision 1.70 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Sep 27 12:58:18 2006 UTC (13 years ago) by parrello
Branch: MAIN
Changes since 1.69: +1 -1 lines
Diff to previous 1.69
Put a better index on HasRoleInSubsystem.

Revision 1.69 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Sep 27 12:34:46 2006 UTC (13 years ago) by parrello
Branch: MAIN
Changes since 1.68: +10 -1 lines
Diff to previous 1.68
Added a relationship between features and subsystems.

Revision 1.68 - (view) (download) (as text) (annotate) - [select for diffs]
Sun Sep 24 17:14:16 2006 UTC (13 years ago) by parrello
Branch: MAIN
Changes since 1.67: +15 -17 lines
Diff to previous 1.67
Moved NMPDR group into the Genome record. This insures that all of the information required to generate a popup menu of genomes is available without access to secondary tables.

Revision 1.67 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Sep 19 00:11:12 2006 UTC (13 years, 1 month ago) by parrello
Branch: MAIN
Changes since 1.66: +3 -1 lines
Diff to previous 1.66
Changed to include a copy of the functional assignment in the feature table.

Revision 1.66 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Sep 6 19:30:53 2006 UTC (13 years, 1 month ago) by parrello
Branch: MAIN
Changes since 1.65: +2 -2 lines
Diff to previous 1.65
Enhanced to sort genome IDs so that progress can be measured more accurately from the trace messages.

Revision 1.65 - (view) (download) (as text) (annotate) - [select for diffs]
Sun Aug 27 00:05:45 2006 UTC (13 years, 1 month ago) by parrello
Branch: MAIN
Changes since 1.64: +5 -1 lines
Diff to previous 1.64
Fixed a bug in the handling of the gene file access code. How could this ever have worked?

Revision 1.64 - (view) (download) (as text) (annotate) - [select for diffs]
Sat Aug 12 08:43:37 2006 UTC (13 years, 2 months ago) by parrello
Branch: MAIN
Changes since 1.63: +6 -3 lines
Diff to previous 1.63
Fixed to load subsystem classifications as a multiply-occurring field.

Revision 1.63 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Aug 2 23:51:19 2006 UTC (13 years, 2 months ago) by parrello
Branch: MAIN
Changes since 1.62: +4 -4 lines
Diff to previous 1.62
Fixed a duplicate table name.

Revision 1.62 - (view) (download) (as text) (annotate) - [select for diffs]
Sun Jul 30 05:44:57 2006 UTC (13 years, 2 months ago) by parrello
Branch: MAIN
Changes since 1.61: +1 -0 lines
Diff to previous 1.61
Fixed a bug in the Family load.

Revision 1.61 - (view) (download) (as text) (annotate) - [select for diffs]
Sun Jul 30 01:41:34 2006 UTC (13 years, 2 months ago) by parrello
Branch: MAIN
Changes since 1.60: +1 -1 lines
Diff to previous 1.60
Converted function name to a text field.

Revision 1.60 - (view) (download) (as text) (annotate) - [select for diffs]
Sun Jul 30 01:18:54 2006 UTC (13 years, 2 months ago) by parrello
Branch: MAIN
Changes since 1.59: +66 -0 lines
Diff to previous 1.59
Added support for protein families.

Revision 1.59 - (view) (download) (as text) (annotate) - [select for diffs]
Sat Jul 29 17:38:47 2006 UTC (13 years, 2 months ago) by parrello
Branch: MAIN
Changes since 1.58: +1 -1 lines
Diff to previous 1.58
Fixed a bug in the synonym group loader.

Revision 1.58 - (view) (download) (as text) (annotate) - [select for diffs]
Sun Jul 16 03:24:48 2006 UTC (13 years, 3 months ago) by parrello
Branch: MAIN
Changes since 1.57: +2 -2 lines
Diff to previous 1.57
Fixed to sort the incoming external data tables to remove duplicates.

Revision 1.57 - (view) (download) (as text) (annotate) - [select for diffs]
Sat Jul 15 08:09:13 2006 UTC (13 years, 3 months ago) by parrello
Branch: MAIN
Changes since 1.56: +32 -32 lines
Diff to previous 1.56
Fixed bugs in the diagram and features loads.

Revision 1.56 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Jul 14 01:37:07 2006 UTC (13 years, 3 months ago) by parrello
Branch: MAIN
Changes since 1.55: +94 -69 lines
Diff to previous 1.55
Fixed Feature and SynonymGroup loads to no longer count on the output sort to remove duplicate keys.

Revision 1.55 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Jul 13 10:03:24 2006 UTC (13 years, 3 months ago) by parrello
Branch: MAIN
Changes since 1.54: +3 -3 lines
Diff to previous 1.54
Changed to load usable subsystems instead of NMPDR subsystems.

Revision 1.54 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Jul 13 08:47:34 2006 UTC (13 years, 3 months ago) by parrello
Branch: MAIN
Changes since 1.53: +2 -0 lines
Diff to previous 1.53
Added tracing.

Revision 1.53 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Jul 10 21:55:06 2006 UTC (13 years, 3 months ago) by parrello
Branch: MAIN
Changes since 1.52: +0 -2 lines
Diff to previous 1.52
Removed some trace messages.

Revision 1.52 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Jul 10 21:34:11 2006 UTC (13 years, 3 months ago) by parrello
Branch: MAIN
Changes since 1.51: +1 -0 lines
Diff to previous 1.51
*** empty log message ***

Revision 1.51 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Jul 10 21:12:51 2006 UTC (13 years, 3 months ago) by parrello
Branch: MAIN
Changes since 1.50: +1 -0 lines
Diff to previous 1.50
Added more tracing.

Revision 1.50 - (view) (download) (as text) (annotate) - [select for diffs]
Sun Jul 9 21:16:47 2006 UTC (13 years, 3 months ago) by parrello
Branch: MAIN
Changes since 1.49: +8 -6 lines
Diff to previous 1.49
Converted the PCH keys to integers.

Revision 1.49 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Jul 7 00:30:04 2006 UTC (13 years, 3 months ago) by parrello
Branch: MAIN
Changes since 1.48: +0 -1 lines
Diff to previous 1.48
*** empty log message ***

Revision 1.48 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Jul 7 00:24:16 2006 UTC (13 years, 3 months ago) by parrello
Branch: MAIN
Changes since 1.47: +22 -10 lines
Diff to previous 1.47
Fixed to close all the load files before attempting to load the database.

Revision 1.47 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Jun 30 18:31:34 2006 UTC (13 years, 3 months ago) by parrello
Branch: MAIN
Changes since 1.46: +1 -1 lines
Diff to previous 1.46
Converted the coupling ID from a hash-string to an ID-string and fixed some call signatures.

Revision 1.46 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Jun 26 19:13:16 2006 UTC (13 years, 3 months ago) by parrello
Branch: MAIN
Changes since 1.45: +6 -0 lines
Diff to previous 1.45
Added support for subsystem classifications.

Revision 1.45 - (view) (download) (as text) (annotate) - [select for diffs]
Sun Jun 25 07:53:37 2006 UTC (13 years, 3 months ago) by parrello
Branch: MAIN
Changes since 1.44: +2 -2 lines
Diff to previous 1.44
*** empty log message ***

Revision 1.44 - (view) (download) (as text) (annotate) - [select for diffs]
Sun Jun 25 07:51:04 2006 UTC (13 years, 3 months ago) by parrello
Branch: MAIN
Changes since 1.43: +3 -1 lines
Diff to previous 1.43
*** empty log message ***

Revision 1.43 - (view) (download) (as text) (annotate) - [select for diffs]
Sun Jun 25 07:34:46 2006 UTC (13 years, 3 months ago) by parrello
Branch: MAIN
Changes since 1.42: +65 -0 lines
Diff to previous 1.42
Added support for mapped synonym IDs.

Revision 1.42 - (view) (download) (as text) (annotate) - [select for diffs]
Sun Jun 18 05:49:28 2006 UTC (13 years, 4 months ago) by parrello
Branch: MAIN
Changes since 1.41: +1 -1 lines
Diff to previous 1.41
Fixed a comment.

Revision 1.41 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Jun 8 19:43:34 2006 UTC (13 years, 4 months ago) by parrello
Branch: MAIN
Changes since 1.40: +2 -2 lines
Diff to previous 1.40
Changed the subsystem load to reduce duplicate pegs in the cluster list.

Revision 1.40 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Jun 8 15:37:32 2006 UTC (13 years, 4 months ago) by parrello
Branch: MAIN
Changes since 1.39: +0 -2 lines
Diff to previous 1.39
Fxied obsolete references to the {_erdb} member.

Revision 1.39 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Jun 8 15:34:53 2006 UTC (13 years, 4 months ago) by parrello
Branch: MAIN
Changes since 1.38: +1 -1 lines
Diff to previous 1.38
Fixed an error in the retrieval of the ERDB object.

Revision 1.38 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Jun 8 15:12:55 2006 UTC (13 years, 4 months ago) by parrello
Branch: MAIN
Changes since 1.37: +3 -3 lines
Diff to previous 1.37
Fixed a bug that was causing real annotations to be thrown out as duplicates.

Revision 1.37 - (view) (download) (as text) (annotate) - [select for diffs]
Sat May 27 02:01:24 2006 UTC (13 years, 4 months ago) by parrello
Branch: MAIN
Changes since 1.36: +1 -1 lines
Diff to previous 1.36
Fixed to remove deleted features from spreadsheet cells.

Revision 1.36 - (view) (download) (as text) (annotate) - [select for diffs]
Fri May 19 07:26:17 2006 UTC (13 years, 5 months ago) by parrello
Branch: MAIN
Changes since 1.35: +37 -39 lines
Diff to previous 1.35
Changed the annotation loader to read the flat file instead of the database.

Revision 1.35 - (view) (download) (as text) (annotate) - [select for diffs]
Mon May 15 20:00:54 2006 UTC (13 years, 5 months ago) by parrello
Branch: MAIN
Changes since 1.34: +59 -53 lines
Diff to previous 1.34
Fixed to skip all access to FIG data when loadOnly is specified.

Revision 1.34 - (view) (download) (as text) (annotate) - [select for diffs]
Sat May 13 04:13:24 2006 UTC (13 years, 5 months ago) by parrello
Branch: MAIN
Changes since 1.33: +3 -2 lines
Diff to previous 1.33
Updated the comments.

Revision 1.33 - (view) (download) (as text) (annotate) - [select for diffs]
Sat May 13 04:11:23 2006 UTC (13 years, 5 months ago) by parrello
Branch: MAIN
Changes since 1.32: +8 -2 lines
Diff to previous 1.32
Fixed to only include NMPDR subsystems.

Revision 1.32 - (view) (download) (as text) (annotate) - [select for diffs]
Sun Apr 2 17:34:44 2006 UTC (13 years, 6 months ago) by parrello
Branch: MAIN
Changes since 1.31: +2 -2 lines
Diff to previous 1.31
*** empty log message ***

Revision 1.31 - (view) (download) (as text) (annotate) - [select for diffs]
Sun Apr 2 16:57:40 2006 UTC (13 years, 6 months ago) by parrello
Branch: MAIN
Changes since 1.30: +142 -139 lines
Diff to previous 1.30
Fixed subsystem load to recover if the subsystem is bad.

Revision 1.30 - (view) (download) (as text) (annotate) - [select for diffs]
Sun Mar 26 12:35:21 2006 UTC (13 years, 6 months ago) by parrello
Branch: MAIN
Changes since 1.29: +4 -0 lines
Diff to previous 1.29
Added a relationship between Feature and Genome.

Revision 1.29 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Mar 13 19:19:37 2006 UTC (13 years, 7 months ago) by parrello
Branch: MAIN
Changes since 1.28: +1 -1 lines
Diff to previous 1.28
Fixed role subset bug.

Revision 1.28 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Feb 13 09:32:58 2006 UTC (13 years, 8 months ago) by parrello
Branch: MAIN
Changes since 1.27: +2 -3 lines
Diff to previous 1.27
Updated to remove taxon ID from the strain field.

Revision 1.27 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Jan 30 22:00:04 2006 UTC (13 years, 8 months ago) by parrello
Branch: MAIN
Changes since 1.26: +1 -1 lines
Diff to previous 1.26
*** empty log message ***

Revision 1.26 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Jan 30 21:57:02 2006 UTC (13 years, 8 months ago) by parrello
Branch: MAIN
Changes since 1.25: +17 -11 lines
Diff to previous 1.25
*** empty log message ***

Revision 1.25 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Jan 30 21:52:29 2006 UTC (13 years, 8 months ago) by parrello
Branch: MAIN
Changes since 1.24: +58 -48 lines
Diff to previous 1.24
Hacked in a switch to load only the main table of a load group.

Revision 1.24 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Jan 17 01:10:54 2006 UTC (13 years, 9 months ago) by parrello
Branch: MAIN
Changes since 1.23: +11 -1 lines
Diff to previous 1.23
Added better tracing to the property loader.

Revision 1.23 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Jan 13 06:59:49 2006 UTC (13 years, 9 months ago) by parrello
Branch: MAIN
Changes since 1.22: +645 -618 lines
Diff to previous 1.22
Converted to allow for a load-only mode that loads from pre-generated files.

Revision 1.22 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Dec 12 21:48:22 2005 UTC (13 years, 10 months ago) by parrello
Branch: MAIN
Changes since 1.21: +1 -16 lines
Diff to previous 1.21
Removed code for creating annotations out of functional assignments.

Revision 1.21 - (view) (download) (as text) (annotate) - [select for diffs]
Sat Nov 12 03:42:48 2005 UTC (13 years, 11 months ago) by parrello
Branch: MAIN
Changes since 1.20: +27 -59 lines
Diff to previous 1.20
Fixed to properly load and test the "RoleOccursIn" relationship.

Revision 1.20 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Nov 2 21:54:40 2005 UTC (13 years, 11 months ago) by parrello
Branch: MAIN
Changes since 1.19: +47 -55 lines
Diff to previous 1.19
Moved the loading of reactions to the Reactions group.
Fixed Reaction and Compound loaders to load all reactions and subsystems rather than only those used in subsystems.
Fixed the Catalyzes loader to use the correct role ID.

Revision 1.19 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Oct 20 09:34:09 2005 UTC (13 years, 11 months ago) by parrello
Branch: MAIN
Changes since 1.18: +16 -5 lines
Diff to previous 1.18
Added the ability to load tables after generating the load files.
Added code to create the new RoleEC table.

Revision 1.18 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Oct 12 03:17:58 2005 UTC (14 years ago) by parrello
Branch: MAIN
Changes since 1.17: +254 -48 lines
Diff to previous 1.17
Added load methods for the new subsystem-related tables.
Fixed annotations so the keys are unique without having to change the timestamps.
Added load methods for the reaction/compound tables.

Revision 1.17 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Sep 19 01:46:51 2005 UTC (14 years, 1 month ago) by parrello
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Changes since 1.16: +1 -1 lines
Diff to previous 1.16
Fixed an error in the Coupling data loader.

Revision 1.16 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Sep 16 10:31:15 2005 UTC (14 years, 1 month ago) by parrello
Branch: MAIN
Changes since 1.15: +9 -4 lines
Diff to previous 1.15
Fixed to handle sources without descriptions.

Revision 1.15 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Sep 16 04:12:05 2005 UTC (14 years, 1 month ago) by parrello
Branch: MAIN
Changes since 1.14: +39 -37 lines
Diff to previous 1.14
Fixed the subsystem load.

Revision 1.14 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Sep 16 02:38:49 2005 UTC (14 years, 1 month ago) by parrello
Branch: MAIN
Changes since 1.13: +31 -33 lines
Diff to previous 1.13
Fixed to iterate through the genomes used instead of the genomes returned by "subsystem_genomes"

Revision 1.13 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Sep 16 02:15:02 2005 UTC (14 years, 1 month ago) by parrello
Branch: MAIN
Changes since 1.12: +1 -1 lines
Diff to previous 1.12
*** empty log message ***

Revision 1.12 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Sep 16 02:09:47 2005 UTC (14 years, 1 month ago) by parrello
Branch: MAIN
Changes since 1.11: +7 -0 lines
Diff to previous 1.11
Added more tracing.

Revision 1.11 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Sep 15 23:07:59 2005 UTC (14 years, 1 month ago) by parrello
Branch: MAIN
Changes since 1.10: +7 -7 lines
Diff to previous 1.10
Fixed to include external and internal aliases for features.

Revision 1.10 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Sep 14 11:40:17 2005 UTC (14 years, 1 month ago) by parrello
Branch: MAIN
Changes since 1.9: +2 -2 lines
Diff to previous 1.9
*** empty log message ***

Revision 1.9 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Sep 14 11:21:24 2005 UTC (14 years, 1 month ago) by parrello
Branch: MAIN
Changes since 1.8: +1 -1 lines
Diff to previous 1.8
*** empty log message ***

Revision 1.8 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Sep 14 09:57:27 2005 UTC (14 years, 1 month ago) by parrello
Branch: MAIN
Changes since 1.7: +42 -28 lines
Diff to previous 1.7
Added a limited (and hopefully faster) load mode for features.

Revision 1.7 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Sep 13 19:05:20 2005 UTC (14 years, 1 month ago) by parrello
Branch: MAIN
Changes since 1.6: +1 -1 lines
Diff to previous 1.6
Fixed error in feature ID generation.

Revision 1.6 - (view) (download) (as text) (annotate) - [select for diffs]
Sun Sep 11 17:09:46 2005 UTC (14 years, 1 month ago) by parrello
Branch: MAIN
Changes since 1.5: +101 -8 lines
Diff to previous 1.5
Added support for additional table groups.

Revision 1.5 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Sep 9 14:55:01 2005 UTC (14 years, 1 month ago) by parrello
Branch: MAIN
Changes since 1.4: +128 -0 lines
Diff to previous 1.4
Added ability to load table groups and source information.

Revision 1.4 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Aug 16 20:35:03 2005 UTC (14 years, 2 months ago) by parrello
Branch: MAIN
Changes since 1.3: +18 -15 lines
Diff to previous 1.3
Fixed some bugs in the Genome load.

Revision 1.3 - (view) (download) (as text) (annotate) - [select for diffs]
Sun Aug 14 23:53:25 2005 UTC (14 years, 2 months ago) by parrello
Branch: MAIN
Changes since 1.2: +25 -21 lines
Diff to previous 1.2
Fixed to work properly with the Unix PERL.

Revision 1.2 - (view) (download) (as text) (annotate) - [select for diffs]
Sun Aug 14 23:47:16 2005 UTC (14 years, 2 months ago) by parrello
Branch: MAIN
Changes since 1.1: +3 -2 lines
Diff to previous 1.1
Added trace messages.

Revision 1.1 - (view) (download) (as text) (annotate) - [select for diffs]
Sun Aug 14 23:32:09 2005 UTC (14 years, 2 months ago) by parrello
Branch: MAIN
Added direct Sprout loading facility.

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