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revision 1.8, Wed Jun 22 21:31:47 2005 UTC revision 1.9, Sun Aug 14 23:59:03 2005 UTC
# Line 38  Line 38 
38                      page or of particular interest to a research group or web site. A single genome can belong to multiple                      page or of particular interest to a research group or web site. A single genome can belong to multiple
39                      such groups or none at all.</Notes>                      such groups or none at all.</Notes>
40                  </Field>                  </Field>
41                  <!-- <Field name="complete" type="boolean">                  <Field name="complete" type="boolean">
42                      <Notes>This field is TRUE if the genome is believed to be complete, else                      <Notes>This field is TRUE if the genome is believed to be complete, else
43                      FALSE.</Notes>                      FALSE.</Notes>
44                  </Field> -->                  </Field>
45              </Fields>              </Fields>
46              <Indexes>              <Indexes>
47                  <Index>                  <Index>
# Line 102  Line 102 
102                      <DataGen>RandChars("ACGT", IntGen(100,400))</DataGen>                      <DataGen>RandChars("ACGT", IntGen(100,400))</DataGen>
103                  </Field>                  </Field>
104                  <Field name="quality-vector" type="text">                  <Field name="quality-vector" type="text">
105                      <Notes>String describing the quality data for each . Individual values will                      <Notes>String describing the quality data for each base pair. Individual values will
106                      be separated by periods. The value represents negative exponent of the probability                      be separated by periods. The value represents negative exponent of the probability
107                      of error. Thus, for example, a quality of 30 indicates the probability of error is                      of error. Thus, for example, a quality of 30 indicates the probability of error is
108                      10^-30. A higher quality number a better chance of a correct match. It is possible                      10^-30. A higher quality number a better chance of a correct match. It is possible
109                      that the quality data is known for a sequence. If that is the case, the quality                      that the quality data is not known for a sequence. If that is the case, the quality
110                      vector will contain the [b]unknown[/b].</Notes>                      vector will contain the [b]unknown[/b].</Notes>
111                      <DataGen>unknown</DataGen>                      <DataGen>unknown</DataGen>
112                  </Field>                  </Field>
# Line 123  Line 123 
123                      <DataGen>RandParam('peg','rna')</DataGen>                      <DataGen>RandParam('peg','rna')</DataGen>
124                  </Field>                  </Field>
125                  <Field name="alias" type="name-string" relation="FeatureAlias">                  <Field name="alias" type="name-string" relation="FeatureAlias">
126                      <Notes>Alternative name for this feature. feature can have many aliases.</Notes>                      <Notes>Alternative name for this feature. A feature can have many aliases.</Notes>
127                      <DataGen testCount="3">StringGen('Pgi|99999', 'Puni|XXXXXX', 'PAAAAAA999')</DataGen>                      <DataGen testCount="3">StringGen('Pgi|99999', 'Puni|XXXXXX', 'PAAAAAA999')</DataGen>
128                  </Field>                  </Field>
129                  <Field name="translation" type="text" relation="FeatureTranslation">                  <Field name="translation" type="text" relation="FeatureTranslation">

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