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revision 1.47, Mon Jan 22 20:24:53 2007 UTC revision 1.48, Tue Apr 10 06:13:54 2007 UTC
# Line 16  Line 16 
16                      genome is taken. It is possible to have in the database more than one genome for a                      genome is taken. It is possible to have in the database more than one genome for a
17                      particular species, and every individual organism has variations in its DNA.</Notes>                      particular species, and every individual organism has variations in its DNA.</Notes>
18                  </Field>                  </Field>
19                    <Field name="version" type="name-string">
20                        <Notes>version string for this genome, generally consisting of the genome ID followed
21                        by a period and a string of digits.</Notes>
22                    </Field>
23                  <Field name="access-code" type="key-string">                  <Field name="access-code" type="key-string">
24                      <Notes>The access code determines which users can look at the data relating to this genome.                      <Notes>The access code determines which users can look at the data relating to this genome.
25                      Each user is associated with a set of access codes. In order to view a genome, one of                      Each user is associated with a set of access codes. In order to view a genome, one of
# Line 24  Line 28 
28                  <Field name="complete" type="boolean">                  <Field name="complete" type="boolean">
29                      <Notes>TRUE if the genome is complete, else FALSE</Notes>                      <Notes>TRUE if the genome is complete, else FALSE</Notes>
30                  </Field>                  </Field>
31                    <Field name="dna-size" type="counter">
32                        <Notes>number of base pairs in the genome</Notes>
33                    </Field>
34                  <Field name="taxonomy" type="text">                  <Field name="taxonomy" type="text">
35                      <Notes>The taxonomy string contains the full taxonomy of the organism, while individual elements                      <Notes>The taxonomy string contains the full taxonomy of the organism, while individual elements
36                      separated by semi-colons (and optional white space), starting with the domain and ending with                      separated by semi-colons (and optional white space), starting with the domain and ending with
# Line 144  Line 151 
151                  <Field name="active" type="boolean">                  <Field name="active" type="boolean">
152                      <Notes>TRUE if this feature is still considered valid, FALSE if it has been logically deleted.</Notes>                      <Notes>TRUE if this feature is still considered valid, FALSE if it has been logically deleted.</Notes>
153                  </Field>                  </Field>
154                    <Field name="assignment-maker" type="name-string">
155                        <Notes>name of the user who made the functional assignment</Notes>
156                    </Field>
157                    <Field name="assignment-quality" type="char">
158                        <Notes>quality of the functional assignment, usually a space, but may be W (indicating weak) or X
159                        (indicating experimental)</Notes>
160                    </Field>
161                  <Field name="keywords" type="text" searchable="1">                  <Field name="keywords" type="text" searchable="1">
162                      <Notes>This is a list of search keywords for the feature. It includes the                      <Notes>This is a list of search keywords for the feature. It includes the
163                      functional assignment, subsystem roles, and special properties.</Notes>                      functional assignment, subsystem roles, and special properties.</Notes>

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