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revision 1.30, Sun Jul 9 21:16:47 2006 UTC revision 1.31, Sun Jul 30 01:18:54 2006 UTC
# Line 408  Line 408 
408                  </Field>                  </Field>
409              </Fields>              </Fields>
410          </Entity>          </Entity>
411            <Entity name="Family" keyType="id-string">
412                <Notes>A family is a group of homologous PEGs believed to have the same function. Protein
413                families provide a mechanism for verifying the accuracy of functional assignments
414                and are also used in determining phylogenetic trees.</Notes>
415                <Fields>
416                    <Field name="function" type="string">
417                        <Notes>The functional assignment expected for all PEGs in this family.</Notes>
418                    </Field>
419                    <Field name="size" type="integer">
420                        <Notes>The number of proteins in this family. This may be larger than the
421                        number of PEGs included in the family, since the family may also contain external
422                        IDs.</Notes>
423                    </Field>
424                </Fields>
425            </Entity>
426      </Entities>      </Entities>
427      <Relationships>      <Relationships>
428            <Relationship name="ContainsFeature" from="Family" to="Feature" arity="MM">
429                <Notes>This relationship connects a protein family to all of its PEGs and connects
430                each PEG to all of its protein families.</Notes>
431            </Relationship>
432          <Relationship name="ParticipatesInCoupling" from="Feature" to="Coupling" arity="MM">          <Relationship name="ParticipatesInCoupling" from="Feature" to="Coupling" arity="MM">
433              <Notes>This relationship connects a feature to all the functional couplings              <Notes>This relationship connects a feature to all the functional couplings
434              in which it participates. A functional coupling is a recognition of the fact              in which it participates. A functional coupling is a recognition of the fact

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