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revision 1.56, Wed Apr 19 03:34:15 2006 UTC revision 1.57, Sat May 13 03:10:15 2006 UTC
# Line 62  Line 62 
62    
63  * B<xmlFileName> name of the XML file containing the database definition (default C<SproutDBD.xml>)  * B<xmlFileName> name of the XML file containing the database definition (default C<SproutDBD.xml>)
64    
65  * B<userData> user name and password, delimited by a slash (default C<root/>)  * B<userData> user name and password, delimited by a slash (default same as SEED)
66    
67  * B<port> connection port (default C<0>)  * B<port> connection port (default C<0>)
68    
69    * B<sock> connection socket (default same as SEED)
70    
71  * B<maxSegmentLength> maximum number of residues per feature segment, (default C<4500>)  * B<maxSegmentLength> maximum number of residues per feature segment, (default C<4500>)
72    
73  * B<maxSequenceLength> maximum number of residues per sequence, (default C<8000>)  * B<maxSequenceLength> maximum number of residues per sequence, (default C<8000>)
# Line 98  Line 100 
100                                                          # user name and password                                                          # user name and password
101                         port         => $FIG_Config::dbport,                         port         => $FIG_Config::dbport,
102                                                          # database connection port                                                          # database connection port
103                           sock         => $FIG_Config::dbsock,
104                         maxSegmentLength => 4500,        # maximum feature segment length                         maxSegmentLength => 4500,        # maximum feature segment length
105                         maxSequenceLength => 8000,       # maximum contig sequence length                         maxSequenceLength => 8000,       # maximum contig sequence length
106                         noDBOpen     => 0,               # 1 to suppress the database open                         noDBOpen     => 0,               # 1 to suppress the database open
# Line 111  Line 114 
114      my $dbh;      my $dbh;
115      if (! $optionTable->{noDBOpen}) {      if (! $optionTable->{noDBOpen}) {
116          $dbh = DBKernel->new($optionTable->{dbType}, $dbName, $userName,          $dbh = DBKernel->new($optionTable->{dbType}, $dbName, $userName,
117                                  $password, $optionTable->{port});                                  $password, $optionTable->{port}, undef, $optionTable->{sock});
118      }      }
119      # Create the ERDB object.      # Create the ERDB object.
120      my $xmlFileName = "$optionTable->{xmlFileName}";      my $xmlFileName = "$optionTable->{xmlFileName}";

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