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revision 1.3, Fri Jan 6 20:35:01 2006 UTC revision 1.4, Wed Feb 1 03:18:07 2006 UTC
# Line 9  Line 9 
9                  <Field name="description" type="string">                  <Field name="description" type="string">
10                      <Notes>Brief description of this genome.</Notes>                      <Notes>Brief description of this genome.</Notes>
11                  </Field>                  </Field>
12                    <Field name="group-name" type="name-string">
13                        <Notes>Name of this genome's close-strain group.</Notes>
14                    </Field>
15    
16              </Fields>              </Fields>
17                <Indexes>
18                    <Index>
19                        <Notes>This index sorts the genomes by group so that
20                        close strains are placed next to each other.</Notes>
21                        <IndexFields>
22                            <IndexField name="group-name" order="ascending" />
23                            <IndexField name="id" order="ascending" />
24                        </IndexFields>
25                    </Index>
26                </Indexes>
27          </Entity>          </Entity>
28          <Entity name="Contig" keyType="key-string">          <Entity name="Contig" keyType="key-string">
29              <Notes>A [i]contig[/i] is a contiguous run of nucleotides. The contig's              <Notes>A [i]contig[/i] is a contiguous run of nucleotides. The contig's
# Line 17  Line 31 
31              which contig this is for the parent genome. The individual components              which contig this is for the parent genome. The individual components
32              are separated by a colon.</Notes>              are separated by a colon.</Notes>
33          </Entity>          </Entity>
34          <Entity name="GroupBlock" keyType="int">          <Entity name="GroupBlock" keyType="name-string">
35              <Notes>A [i]group block[/i] is a set of similar genome regions.              <Notes>A [i]group block[/i] is a set of similar genome regions.
36              A group block can represent a gene or an inter-genic region.              A group block can represent a gene or an inter-genic region.
37              The result is that every position in a contig belongs to exactly              The result is that every position in a contig belongs to exactly

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