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revision 1.2, Thu Jun 9 19:06:55 2005 UTC revision 1.3, Fri Jan 6 20:35:01 2006 UTC
# Line 84  Line 84 
84                                          <Notes>Length of this region. This may be slightly smaller                                          <Notes>Length of this region. This may be slightly smaller
85                                          than the block length.</Notes>                                          than the block length.</Notes>
86                                  </Field>                                  </Field>
87                    <Field name="end" type="int">
88                        <Notes>Index (1-based) of the region's rightmost nucleotide
89                        in the contig.</Notes>
90                    </Field>
91                                  <Field name="peg" type="name-string">                                  <Field name="peg" type="name-string">
92                                          <Notes>PEG identifier for this block if it is a gene block,                                          <Notes>PEG identifier for this block if it is a gene block,
93                                          or aa string generated from the nearby PEGs if it is an                      or a string generated from the nearby PEGs if it is an
94                                          inter-genic block</Notes>                                          inter-genic block</Notes>
95                                  </Field>                                  </Field>
96              </Fields>              </Fields>
97                <Indexes>
98                    <Index>
99                        <Notes>This index enables the application to find regions
100                        that overlap a specific section of the contig.  The index
101                        can be used to find the first region whose end point is at
102                        or follows the start of the section in question. Because
103                        every nucleotide is in at most one region, this guarantees
104                        that if any region overlaps the section, the region found
105                        by the index will.</Notes>
106                        <IndexFields>
107                            <IndexField name="end" order="ascending" />
108                        </IndexFields>
109                    </Index>
110                </Indexes>
111                  </Entity>                  </Entity>
112      </Entities>      </Entities>
113      <Relationships>      <Relationships>

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