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Revision 1.48 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Apr 2 01:45:05 2009 UTC (10 years, 5 months ago) by parrello
Branch: MAIN
CVS Tags: HEAD, mgrast_dev_03252011, mgrast_dev_03312011, mgrast_dev_04012011, mgrast_dev_04052011, mgrast_dev_04082011, mgrast_dev_04132011, mgrast_dev_06072011, mgrast_dev_08022011, mgrast_dev_08112011, mgrast_dev_10262011, mgrast_dev_12152011, mgrast_release_3_0, mgrast_release_3_0_1, mgrast_release_3_0_2, mgrast_release_3_0_3, mgrast_release_3_0_4, mgrast_release_3_1_0, mgrast_release_3_1_1, mgrast_release_3_1_2, mgrast_version_3_2, myrast_33, rast_rel_2009_05_18, rast_rel_2009_07_09, rast_rel_2009_0925, rast_rel_2010_0118, rast_rel_2010_0526, rast_rel_2010_0827, rast_rel_2010_0928, rast_rel_2010_1206, rast_rel_2011_0119, rast_rel_2011_0928, rast_rel_2014_0729, rast_rel_2014_0912
Changes since 1.47: +40 -0 lines
Diff to previous 1.47 , to selected 1.7
Added ID parsing logic for the Batch Search.

Revision 1.47 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Mar 16 00:23:37 2009 UTC (10 years, 6 months ago) by parrello
Branch: MAIN
Changes since 1.46: +7 -7 lines
Diff to previous 1.46 , to selected 1.7
Converted to new hint system.

Revision 1.46 - (view) (download) (as text) (annotate) - [select for diffs]
Sat Mar 7 18:07:36 2009 UTC (10 years, 6 months ago) by parrello
Branch: MAIN
Changes since 1.45: +2 -2 lines
Diff to previous 1.45 , to selected 1.7
Cleaned up some error messages. Fixed some bugs in search.

Revision 1.45 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Mar 2 22:31:33 2009 UTC (10 years, 6 months ago) by parrello
Branch: MAIN
CVS Tags: rast_rel_2009_03_26
Changes since 1.44: +7 -54 lines
Diff to previous 1.44 , to selected 1.7
Added support for form IDs.

Revision 1.44 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Feb 5 07:17:03 2009 UTC (10 years, 7 months ago) by parrello
Branch: MAIN
Changes since 1.43: +1 -2 lines
Diff to previous 1.43 , to selected 1.7
Changed the expiration interval for the remembered parameters.

Revision 1.43 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Jan 19 21:56:19 2009 UTC (10 years, 8 months ago) by parrello
Branch: MAIN
CVS Tags: rast_rel_2009_02_05
Changes since 1.42: +179 -50 lines
Diff to previous 1.42 , to selected 1.7
Improved search result support.

Revision 1.42 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Oct 17 16:41:47 2008 UTC (10 years, 11 months ago) by parrello
Branch: MAIN
CVS Tags: mgrast_rel_2008_1110, mgrast_rel_2008_1110_v2, rast_rel_2008_11_24, rast_rel_2008_12_18
Changes since 1.41: +11 -3 lines
Diff to previous 1.41 , to selected 1.7
Added support for comment labels in FASTA downloads.

Revision 1.41 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Sep 3 20:54:47 2008 UTC (11 years ago) by parrello
Branch: MAIN
CVS Tags: mgrast_rel_2008_0625, mgrast_rel_2008_0917, mgrast_rel_2008_0919, mgrast_rel_2008_0923, mgrast_rel_2008_0924, rast_2008_0924, rast_rel_2008_09_29, rast_rel_2008_09_30, rast_rel_2008_10_09, rast_rel_2008_10_29, rast_release_2008_09_29
Changes since 1.40: +23 -224 lines
Diff to previous 1.40 , to selected 1.7
Fixed URLs.

Revision 1.40 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Apr 29 20:52:05 2008 UTC (11 years, 4 months ago) by parrello
Branch: MAIN
CVS Tags: mgrast_rel_2008_0806, rast_rel_2008_06_16, rast_rel_2008_06_18, rast_rel_2008_07_21, rast_rel_2008_08_07
Changes since 1.39: +3 -4 lines
Diff to previous 1.39 , to selected 1.7
Changed hint function to use the new wiki syntax for links.

Revision 1.39 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Feb 5 05:43:46 2008 UTC (11 years, 7 months ago) by parrello
Branch: MAIN
CVS Tags: rast_rel_2008_04_23
Changes since 1.38: +3 -3 lines
Diff to previous 1.38 , to selected 1.7
Fixed Wiki help pointer.

Revision 1.38 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Dec 6 14:58:03 2007 UTC (11 years, 9 months ago) by parrello
Branch: MAIN
Changes since 1.37: +56 -52 lines
Diff to previous 1.37 , to selected 1.7
Changed POD format for better compatability with Wiki.

Revision 1.37 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Aug 20 23:22:42 2007 UTC (12 years, 1 month ago) by parrello
Branch: MAIN
Changes since 1.36: +22 -19 lines
Diff to previous 1.36 , to selected 1.7
Changed hints to pop up a wiki page when clicked. Removed OtherOnly button from the genome control. Removed some obsolete tracing-related code.

Revision 1.36 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Jul 25 16:21:21 2007 UTC (12 years, 1 month ago) by parrello
Branch: MAIN
Changes since 1.35: +7 -3 lines
Diff to previous 1.35 , to selected 1.7
Fixed an error that caused search results to appear in the wrong order.

Revision 1.35 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Jul 16 20:53:11 2007 UTC (12 years, 2 months ago) by parrello
Branch: MAIN
Changes since 1.34: +2 -3 lines
Diff to previous 1.34 , to selected 1.7
Fixed some bugs in the advanced gene search.

Revision 1.34 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Jul 16 20:04:51 2007 UTC (12 years, 2 months ago) by parrello
Branch: MAIN
Changes since 1.33: +238 -1012 lines
Diff to previous 1.33 , to selected 1.7
Converted to the new search system.

Revision 1.33 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Jun 19 21:28:21 2007 UTC (12 years, 3 months ago) by parrello
Branch: MAIN
Changes since 1.32: +89 -10 lines
Diff to previous 1.32 , to selected 1.7
Fixed some bugs. Added support for the pattern scan search.

Revision 1.32 - (view) (download) (as text) (annotate) - [select for diffs]
Thu May 17 23:43:30 2007 UTC (12 years, 4 months ago) by parrello
Branch: MAIN
Changes since 1.31: +142 -38 lines
Diff to previous 1.31 , to selected 1.7
Added support for a flanking width in the FASTA formatter. Changed genome menu to separate supporting genomes by domain and use colors.

Revision 1.31 - (view) (download) (as text) (annotate) - [select for diffs]
Fri May 11 06:28:21 2007 UTC (12 years, 4 months ago) by parrello
Branch: MAIN
Changes since 1.30: +92 -11 lines
Diff to previous 1.30 , to selected 1.7
Added support for non-feature searches.

Revision 1.30 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Apr 19 00:05:51 2007 UTC (12 years, 5 months ago) by parrello
Branch: MAIN
Changes since 1.29: +70 -19 lines
Diff to previous 1.29 , to selected 1.7
Added a utility method for handling tuning parameters more easily and provided improved control for positioning of extra columns.

Revision 1.29 - (view) (download) (as text) (annotate) - [select for diffs]
Sat Apr 14 21:41:25 2007 UTC (12 years, 5 months ago) by parrello
Branch: MAIN
Changes since 1.28: +56 -17 lines
Diff to previous 1.28 , to selected 1.7
Fixed a bug in the MakeTable method that caused the subsystem trees to look ridiculous in Internet Explorer. Added support for FASTA downloads.

Revision 1.28 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Apr 10 06:05:40 2007 UTC (12 years, 5 months ago) by parrello
Branch: MAIN
Changes since 1.27: +90 -9 lines
Diff to previous 1.27 , to selected 1.7
Added support for search result downloads and for status messages during long searches.

Revision 1.27 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Feb 21 13:18:27 2007 UTC (12 years, 7 months ago) by parrello
Branch: MAIN
Changes since 1.26: +63 -8 lines
Diff to previous 1.26 , to selected 1.7
Added the ability to split the filter rows.

Revision 1.26 - (view) (download) (as text) (annotate) - [select for diffs]
Sun Feb 4 13:07:24 2007 UTC (12 years, 7 months ago) by parrello
Branch: MAIN
Changes since 1.25: +13 -2 lines
Diff to previous 1.25 , to selected 1.7
Backed out the ENTER fix for Internet Explorer. Added code to make unclassified subsystems sort to the end of the subsystem tree.

Revision 1.25 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Dec 20 20:06:17 2006 UTC (12 years, 9 months ago) by parrello
Branch: MAIN
Changes since 1.24: +1 -5 lines
Diff to previous 1.24 , to selected 1.7
Changed so that a search is performed if no results exist and the user pressed ENTER instead of clicking the search button.

Revision 1.24 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Dec 15 03:27:20 2006 UTC (12 years, 9 months ago) by parrello
Branch: MAIN
Changes since 1.23: +2 -2 lines
Diff to previous 1.23 , to selected 1.7
Added "x" and "n" to the legal DNA letters.

Revision 1.23 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Dec 6 03:35:42 2006 UTC (12 years, 9 months ago) by parrello
Branch: MAIN
Changes since 1.22: +53 -2 lines
Diff to previous 1.22 , to selected 1.7
Converted the mini-forms on the search results to fake buttons.

Revision 1.22 - (view) (download) (as text) (annotate) - [select for diffs]
Sat Dec 2 09:45:30 2006 UTC (12 years, 9 months ago) by parrello
Branch: MAIN
Changes since 1.21: +4 -1 lines
Diff to previous 1.21 , to selected 1.7
Fixed a bug with keyword validation. Changed the ShowURL checkbox default to checked.

Revision 1.21 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Nov 30 23:04:37 2006 UTC (12 years, 9 months ago) by parrello
Branch: MAIN
Changes since 1.20: +1 -1 lines
Diff to previous 1.20 , to selected 1.7
Changed the label on the organism name column.

Revision 1.20 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Nov 21 17:23:41 2006 UTC (12 years, 10 months ago) by parrello
Branch: MAIN
Changes since 1.19: +1 -1 lines
Diff to previous 1.19 , to selected 1.7
Fixed a bug in ComputeFASTA.

Revision 1.19 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Nov 20 05:54:09 2006 UTC (12 years, 10 months ago) by parrello
Branch: MAIN
Changes since 1.18: +45 -14 lines
Diff to previous 1.18 , to selected 1.7
Upgraded so that the search parameters are preserved by the page navigator.

Revision 1.18 - (view) (download) (as text) (annotate) - [select for diffs]
Sat Nov 18 20:36:49 2006 UTC (12 years, 10 months ago) by parrello
Branch: MAIN
Changes since 1.17: +91 -44 lines
Diff to previous 1.17 , to selected 1.7
Added support for blastx. Changed search box on genome menu to use a button. Added ability to change main button caption.

Revision 1.17 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Nov 15 22:34:50 2006 UTC (12 years, 10 months ago) by parrello
Branch: MAIN
Changes since 1.16: +2 -2 lines
Diff to previous 1.16 , to selected 1.7
Changed "feature" to "gene" in display text.

Revision 1.16 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Nov 15 12:02:46 2006 UTC (12 years, 10 months ago) by parrello
Branch: MAIN
Changes since 1.15: +563 -0 lines
Diff to previous 1.15 , to selected 1.7
Added support for tree controls and keyword field validation.

Revision 1.15 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Nov 10 22:01:36 2006 UTC (12 years, 10 months ago) by parrello
Branch: MAIN
Changes since 1.14: +12 -12 lines
Diff to previous 1.14 , to selected 1.7
Changed the handling of the advanced class list so that it is no longer necessary to maintain a list of search helpers.
Changed the genome menu so that we can remove the Search button.

Revision 1.14 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Nov 8 23:18:24 2006 UTC (12 years, 10 months ago) by parrello
Branch: MAIN
Changes since 1.13: +24 -15 lines
Diff to previous 1.13 , to selected 1.7
Added capability to override the default feature columns. Moved the extra columns to the front of the result list.

Revision 1.13 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Nov 3 00:40:16 2006 UTC (12 years, 10 months ago) by parrello
Branch: MAIN
Changes since 1.12: +72 -33 lines
Diff to previous 1.12 , to selected 1.7
Added support for the new special attribute keywords and for display of subsystems in the result list.

Revision 1.12 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Oct 16 22:58:37 2006 UTC (12 years, 11 months ago) by parrello
Branch: MAIN
Changes since 1.11: +1 -35 lines
Diff to previous 1.11 , to selected 1.7
Removed obsolete feature-type code.

Revision 1.11 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Oct 16 07:44:13 2006 UTC (12 years, 11 months ago) by parrello
Branch: MAIN
Changes since 1.10: +49 -32 lines
Diff to previous 1.10 , to selected 1.7
Factored the FeatureQuery module into a base class that handles feature manipulation and a subclass that handles feature manipulation and query support.

Revision 1.10 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Oct 13 21:45:11 2006 UTC (12 years, 11 months ago) by parrello
Branch: MAIN
Changes since 1.9: +80 -25 lines
Diff to previous 1.9 , to selected 1.7
Added fulltext search support to ERDB. Added keyword searchability to the Feature table.

Revision 1.9 - (view) (download) (as text) (annotate) - [select for diffs]
Sat Oct 7 13:18:11 2006 UTC (12 years, 11 months ago) by parrello
Branch: MAIN
Changes since 1.8: +44 -3 lines
Diff to previous 1.8 , to selected 1.7
Fixed some comments. Fixed the advanced-clasess and feature-types methods.

Revision 1.8 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Oct 4 16:03:35 2006 UTC (12 years, 11 months ago) by parrello
Branch: MAIN
Changes since 1.7: +11 -2 lines
Diff to previous 1.7
Added the capability to de-select genomes selected in another gene menu.

Revision 1.7 - (view) (download) (as text) (annotate) - [selected]
Tue Oct 3 11:05:45 2006 UTC (12 years, 11 months ago) by parrello
Branch: MAIN
Changes since 1.6: +1 -1 lines
Diff to previous 1.6
Upgraded to allow specification of multiple property values per property.

Revision 1.6 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Oct 2 07:31:46 2006 UTC (12 years, 11 months ago) by parrello
Branch: MAIN
Changes since 1.5: +1 -1 lines
Diff to previous 1.5 , to selected 1.7
Fixed GBrowse URL method.

Revision 1.5 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Oct 2 06:35:31 2006 UTC (12 years, 11 months ago) by parrello
Branch: MAIN
Changes since 1.4: +2 -0 lines
Diff to previous 1.4 , to selected 1.7
*** empty log message ***

Revision 1.4 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Oct 2 03:15:37 2006 UTC (12 years, 11 months ago) by parrello
Branch: MAIN
Changes since 1.3: +73 -47 lines
Diff to previous 1.3 , to selected 1.7
Moved the show aliases option to the FeatureQuery object.

Revision 1.3 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Sep 29 15:10:05 2006 UTC (12 years, 11 months ago) by parrello
Branch: MAIN
Changes since 1.2: +420 -50 lines
Diff to previous 1.2 , to selected 1.7
Added support for specifying all genomes or feature types more simply in GET-style URLs, Converted property name control to a drop-down. Added a string search to the genome menu. Enhanced the FidSearch to let the user specify multiple genomes. Fixed a whole bunch of bugs.

Revision 1.2 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Sep 27 16:55:38 2006 UTC (12 years, 11 months ago) by parrello
Branch: MAIN
Changes since 1.1: +215 -26 lines
Diff to previous 1.1 , to selected 1.7
First round for the search overhaul.

Revision 1.1 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Sep 26 13:46:03 2006 UTC (12 years, 11 months ago) by parrello
Branch: MAIN
Diff to selected 1.7
Initial code for the new search.

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