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revision 1.3, Tue Jul 12 18:41:52 2011 UTC revision 1.4, Tue Oct 7 17:12:21 2014 UTC
# Line 116  Line 116 
116    
117  Name of the directory containing the taxonomic dump files from the NCBI.  Name of the directory containing the taxonomic dump files from the NCBI.
118    
119  =item setFile  =item setFile (optional)
120    
121  Name of the file containing the OTU information.  Name of the file containing the OTU information. If omitted, the OTU information is not loaded.
122    
123  =item RETURN  =item RETURN
124    
# Line 134  Line 134 
134      # Create the helper object.      # Create the helper object.
135      my $loaderObject = SaplingTaxonomyLoader->new($sap);      my $loaderObject = SaplingTaxonomyLoader->new($sap);
136      # Load the OTUs.      # Load the OTUs.
137        if ($setFile) {
138      $loaderObject->ReadGenomeSets($setFile);      $loaderObject->ReadGenomeSets($setFile);
139        }
140      # Load the taxonomy data.      # Load the taxonomy data.
141      $loaderObject->ReadTaxonomies($dumpDirectory);      $loaderObject->ReadTaxonomies($dumpDirectory);
142      # Return the statistics.      # Return the statistics.

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