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revision 1.4, Mon Oct 3 20:34:51 2011 UTC revision 1.7, Fri Nov 2 20:28:52 2012 UTC
# Line 8  Line 8 
8    
9      my ($sap, $sapObject, $altObject);      my ($sap, $sapObject, $altObject);
10      if ($ENV{SAS_SERVER} eq 'localhost') {      if ($ENV{SAS_SERVER} eq 'localhost') {
11          $sap = Sapling->new(dbName => 'pubseed_sapling_07', dbhost => 'localhost', port => 3399);          $sap = Sapling->new(dbName => 'pubseed_sapling_10', dbhost => 'localhost', port => 3399);
12  #        $sap = Sapling->new(dbName => 'pseed_sapling_07', dbhost => 'localhost', port => 3333);  #        $sap = Sapling->new(dbName => 'pseed_sapling_07', dbhost => 'localhost', port => 3333);
13          $sapObject = SAPserver->new(sapDB => $sap, url => 'localhost');          $sapObject = SAPserver->new(sapDB => $sap, url => 'localhost');
14  #        $altObject = ALITREserver->new(sapDB => $sap, url => 'localhost');          $altObject = ALITREserver->new(sapDB => $sap, url => 'localhost');
15          $FIG_Config::orgCache = "P:/vol/public-pseed/SharedData/OrgCache";          $FIG_Config::orgCache = "P:/vol/public-pseed/SharedData/OrgCache";
16            $FIG_Config::attrHost = "localhost";
17            $FIG_Config::attrPort = 3333;
18      } else {      } else {
19          $sapObject = SAPserver->new();          $sapObject = SAPserver->new();
20  #        $altObject = ALITREserver->new();  #        $altObject = ALITREserver->new();
21      }      }
22      my $genomes = $sapObject->all_genomes();  #
23      print scalar(keys %$genomes) . " genomes found.\n";  my @ids = qw( cfe6d12b8a842868ee25e4b775456cda
24                  03382fd0dbe13a282d4b7b01be7f9d9c
25                  616c2e7e50820a5862be6a2364206975
26                );
27    
28    my $result;
29    
30    $result = $sapObject->select( { -path   =>   'ProteinSequence',
31                               -filter => { 'ProteinSequence(id)' => \@ids },
32                               -fields => [ qw(id sequence) ],
33                             }
34                           );
35    
36    print Dumper( \@ids, $result );
37    
38    @ids = reverse @ids;
39    $result = $sapObject->select( { -path   =>   'ProteinSequence',
40                               -filter => { 'ProteinSequence(id)' => \@ids },
41                               -fields => [ qw(id sequence) ],
42                             }
43                           );
44    
45    print Dumper( \@ids, $result );
46  1;  1;

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