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revision 1.2, Wed Sep 21 21:05:15 2011 UTC revision 1.8, Tue May 20 18:15:09 2014 UTC
# Line 4  Line 4 
4  use SeedEnv;  use SeedEnv;
5  use Tracer;  use Tracer;
6  use Sapling;  use Sapling;
7  use ALITREserver;  use ScriptThing;
8    use Data::Dumper;
9    
10      my ($sap, $sapObject, $altObject);      my ($sap, $sapObject, $altObject);
11      if ($ENV{SAS_SERVER} eq 'localhost') {      if ($ENV{SAS_SERVER} eq 'localhost') {
12          $sap = Sapling->new(dbName => 'pubseed_sapling_07', dbhost => 'localhost', port => 3399);          $sap = Sapling->new(dbName => 'pubseed_sapling_14', dbhost => 'localhost', port => 3333);
13  #        $sap = Sapling->new(dbName => 'pseed_sapling_07', dbhost => 'localhost', port => 3333);  #        $sap = Sapling->new(dbName => 'pseed_sapling_07', dbhost => 'localhost', port => 3333);
14          $sapObject = SAPserver->new(sapDB => $sap, url => 'localhost');          $sapObject = SAPserver->new(sapDB => $sap, url => 'localhost');
15          $altObject = ALITREserver->new(sapDB => $sap, url => 'localhost');          $FIG_Config::orgCache = "P:/vol/public-pseed/SharedData/OrgCache";
16            $FIG_Config::attrHost = "localhost";
17            $FIG_Config::attrPort = 3333;
18      } else {      } else {
19          $sapObject = SAPserver->new();          $sapObject = SAPserver->new();
         $altObject = ALITREserver->new();  
20      }      }
21      my @roles = ('Acetate kinase (EC 2.7.2.1)', 'D-glucarate permease');  #
22      my $roleHash = $sapObject->role_reactions(-ids => \@roles, -formulas => 1);  
23      my $roleHash2 = $sapObject->roles_to_complexes(-ids => \@roles);  my $result;
24      print "All done.\n";  
25    my @tuples = (['fig|83333.1.peg.10']);
26    my %comments = ScriptThing::CommentHash(\@tuples);
27    $result = $sapObject->upstream( { -ids => $tuples[0],
28                               -size => 200, -fasta => 1,
29                               -comments => \%comments,
30                               -skipGene => ''
31                             }
32                           );
33    
34    print Dumper( $result );
35    
 1;  

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