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revision 1.2, Wed Sep 21 21:05:15 2011 UTC revision 1.4, Mon Oct 3 20:34:51 2011 UTC
# Line 11  Line 11 
11          $sap = Sapling->new(dbName => 'pubseed_sapling_07', dbhost => 'localhost', port => 3399);          $sap = Sapling->new(dbName => 'pubseed_sapling_07', dbhost => 'localhost', port => 3399);
12  #        $sap = Sapling->new(dbName => 'pseed_sapling_07', dbhost => 'localhost', port => 3333);  #        $sap = Sapling->new(dbName => 'pseed_sapling_07', dbhost => 'localhost', port => 3333);
13          $sapObject = SAPserver->new(sapDB => $sap, url => 'localhost');          $sapObject = SAPserver->new(sapDB => $sap, url => 'localhost');
14          $altObject = ALITREserver->new(sapDB => $sap, url => 'localhost');  #        $altObject = ALITREserver->new(sapDB => $sap, url => 'localhost');
15            $FIG_Config::orgCache = "P:/vol/public-pseed/SharedData/OrgCache";
16      } else {      } else {
17          $sapObject = SAPserver->new();          $sapObject = SAPserver->new();
18          $altObject = ALITREserver->new();  #        $altObject = ALITREserver->new();
19      }      }
20      my @roles = ('Acetate kinase (EC 2.7.2.1)', 'D-glucarate permease');      my $genomes = $sapObject->all_genomes();
21      my $roleHash = $sapObject->role_reactions(-ids => \@roles, -formulas => 1);      print scalar(keys %$genomes) . " genomes found.\n";
     my $roleHash2 = $sapObject->roles_to_complexes(-ids => \@roles);  
     print "All done.\n";  
22    
23  1;  1;

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