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Revision 1.22 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Mar 16 00:24:23 2009 UTC (10 years, 3 months ago) by parrello
Branch: MAIN
CVS Tags: HEAD, mgrast_dev_03252011, mgrast_dev_03312011, mgrast_dev_04012011, mgrast_dev_04052011, mgrast_dev_04082011, mgrast_dev_04132011, mgrast_dev_06072011, mgrast_dev_08022011, mgrast_dev_08112011, mgrast_dev_10262011, mgrast_dev_12152011, mgrast_release_3_0, mgrast_release_3_0_1, mgrast_release_3_0_2, mgrast_release_3_0_3, mgrast_release_3_0_4, mgrast_release_3_1_0, mgrast_release_3_1_1, mgrast_release_3_1_2, mgrast_version_3_2, myrast_33, rast_rel_2009_05_18, rast_rel_2009_07_09, rast_rel_2009_0925, rast_rel_2010_0118, rast_rel_2010_0526, rast_rel_2010_0827, rast_rel_2010_0928, rast_rel_2010_1206, rast_rel_2011_0119, rast_rel_2011_0928, rast_rel_2014_0729, rast_rel_2014_0912
Changes since 1.21: +3 -13 lines
Diff to previous 1.21 , to selected 1.19
Converted to new hint system.

Revision 1.21 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Feb 5 07:24:09 2009 UTC (10 years, 4 months ago) by parrello
Branch: MAIN
CVS Tags: rast_rel_2009_03_26
Changes since 1.20: +166 -162 lines
Diff to previous 1.20 , to selected 1.19
Fixed to properly recognize when the reference genome is in the exclusion set.

Revision 1.20 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Jan 19 21:56:19 2009 UTC (10 years, 5 months ago) by parrello
Branch: MAIN
CVS Tags: rast_rel_2009_02_05
Changes since 1.19: +21 -21 lines
Diff to previous 1.19
Improved search result support.

Revision 1.19 - (view) (download) (as text) (annotate) - [selected]
Tue Apr 29 20:52:45 2008 UTC (11 years, 1 month ago) by parrello
Branch: MAIN
CVS Tags: mgrast_rel_2008_0625, mgrast_rel_2008_0806, mgrast_rel_2008_0917, mgrast_rel_2008_0919, mgrast_rel_2008_0923, mgrast_rel_2008_0924, mgrast_rel_2008_1110, mgrast_rel_2008_1110_v2, rast_2008_0924, rast_rel_2008_06_16, rast_rel_2008_06_18, rast_rel_2008_07_21, rast_rel_2008_08_07, rast_rel_2008_09_29, rast_rel_2008_09_30, rast_rel_2008_10_09, rast_rel_2008_10_29, rast_rel_2008_11_24, rast_rel_2008_12_18, rast_release_2008_09_29
Changes since 1.18: +1 -1 lines
Diff to previous 1.18
Fixed a typo.

Revision 1.18 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Dec 6 14:58:03 2007 UTC (11 years, 6 months ago) by parrello
Branch: MAIN
CVS Tags: rast_rel_2008_04_23
Changes since 1.17: +6 -6 lines
Diff to previous 1.17 , to selected 1.19
Changed POD format for better compatability with Wiki.

Revision 1.17 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Aug 20 23:25:32 2007 UTC (11 years, 10 months ago) by parrello
Branch: MAIN
Changes since 1.16: +6 -3 lines
Diff to previous 1.16 , to selected 1.19
Converted to new hint system.

Revision 1.16 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Jul 16 20:04:51 2007 UTC (11 years, 11 months ago) by parrello
Branch: MAIN
Changes since 1.15: +134 -136 lines
Diff to previous 1.15 , to selected 1.19
Converted to the new search system.

Revision 1.15 - (view) (download) (as text) (annotate) - [select for diffs]
Thu May 17 23:44:21 2007 UTC (12 years, 1 month ago) by parrello
Branch: MAIN
Changes since 1.14: +39 -0 lines
Diff to previous 1.14 , to selected 1.19
Changed to return the genes ordered by score.

Revision 1.14 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Apr 19 00:07:02 2007 UTC (12 years, 2 months ago) by parrello
Branch: MAIN
Changes since 1.13: +1 -1 lines
Diff to previous 1.13 , to selected 1.19
Fixed to use the new protocol for extra column positioning.

Revision 1.13 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Apr 10 15:34:07 2007 UTC (12 years, 2 months ago) by parrello
Branch: MAIN
Changes since 1.12: +7 -6 lines
Diff to previous 1.12 , to selected 1.19
Removed PEGs-only box.

Revision 1.12 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Apr 10 06:10:02 2007 UTC (12 years, 2 months ago) by parrello
Branch: MAIN
Changes since 1.11: +152 -93 lines
Diff to previous 1.11 , to selected 1.19
Converted to use similarities as well as BBHs.

Revision 1.11 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Feb 21 13:20:37 2007 UTC (12 years, 3 months ago) by parrello
Branch: MAIN
Changes since 1.10: +70 -22 lines
Diff to previous 1.10 , to selected 1.19
Changed to output the score and the matching features.

Revision 1.10 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Dec 6 03:36:04 2006 UTC (12 years, 6 months ago) by parrello
Branch: MAIN
Changes since 1.9: +89 -53 lines
Diff to previous 1.9 , to selected 1.19
Converted to use a batch request to the BBH server.

Revision 1.9 - (view) (download) (as text) (annotate) - [select for diffs]
Sat Dec 2 09:46:01 2006 UTC (12 years, 6 months ago) by parrello
Branch: MAIN
Changes since 1.8: +15 -12 lines
Diff to previous 1.8 , to selected 1.19
Rearranged the forms to be more user-friendly.

Revision 1.8 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Nov 16 22:58:28 2006 UTC (12 years, 7 months ago) by parrello
Branch: MAIN
Changes since 1.7: +1 -1 lines
Diff to previous 1.7 , to selected 1.19
Changed "feature" to "gene" in a status  message.

Revision 1.7 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Nov 15 12:13:40 2006 UTC (12 years, 7 months ago) by parrello
Branch: MAIN
Changes since 1.6: +1 -1 lines
Diff to previous 1.6 , to selected 1.19
Fixed a comment.

Revision 1.6 - (view) (download) (as text) (annotate) - [select for diffs]
Sun Oct 8 01:50:06 2006 UTC (12 years, 8 months ago) by parrello
Branch: MAIN
Changes since 1.5: +1 -1 lines
Diff to previous 1.5 , to selected 1.19
Changed the default for using statistical analysis.

Revision 1.5 - (view) (download) (as text) (annotate) - [select for diffs]
Sat Oct 7 13:20:35 2006 UTC (12 years, 8 months ago) by parrello
Branch: MAIN
Changes since 1.4: +37 -7 lines
Diff to previous 1.4 , to selected 1.19
Fixed the session close.

Revision 1.4 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Oct 4 16:03:55 2006 UTC (12 years, 8 months ago) by parrello
Branch: MAIN
Changes since 1.3: +92 -3 lines
Diff to previous 1.3 , to selected 1.19
Coded an initial, experimental search algorithm.

Revision 1.3 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Sep 29 15:10:05 2006 UTC (12 years, 8 months ago) by parrello
Branch: MAIN
Changes since 1.2: +7 -9 lines
Diff to previous 1.2 , to selected 1.19
Added support for specifying all genomes or feature types more simply in GET-style URLs, Converted property name control to a drop-down. Added a string search to the genome menu. Enhanced the FidSearch to let the user specify multiple genomes. Fixed a whole bunch of bugs.

Revision 1.2 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Sep 27 16:55:38 2006 UTC (12 years, 8 months ago) by parrello
Branch: MAIN
Changes since 1.1: +32 -5 lines
Diff to previous 1.1 , to selected 1.19
First round for the search overhaul.

Revision 1.1 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Sep 26 13:46:03 2006 UTC (12 years, 8 months ago) by parrello
Branch: MAIN
Diff to selected 1.19
Initial code for the new search.

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