[Bio] Log of /Sprout/LoadSproutTables.pl

Fixed some documentation, set the default trace level to 3.

Revision 1.48 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Sep 9 21:02:10 2008 UTC (11 years, 3 months ago) by parrello
Branch: MAIN
Changes since 1.47: +8 -11 lines
Diff to previous 1.47 , to selected 1.27

Changes for v24 database.

Revision 1.47 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Feb 5 05:04:26 2008 UTC (11 years, 10 months ago) by parrello
Branch: MAIN
CVS Tags: mgrast_rel_2008_0806, rast_rel_2008_04_23, rast_rel_2008_06_16, rast_rel_2008_06_18, rast_rel_2008_07_21, rast_rel_2008_08_07
Changes since 1.46: +0 -32 lines
Diff to previous 1.46 , to selected 1.27

Removed some incorrect comments.

Revision 1.46 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Dec 6 14:58:03 2007 UTC (12 years ago) by parrello
Branch: MAIN
Changes since 1.45: +4 -1 lines
Diff to previous 1.45 , to selected 1.27

Changed POD format for better compatability with Wiki.

Revision 1.45 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Nov 5 22:53:03 2007 UTC (12 years, 1 month ago) by parrello
Branch: MAIN
Changes since 1.44: +3 -0 lines
Diff to previous 1.44 , to selected 1.27

Fixed the error handling so that the appropriate error message is displayed when a load fails.

Revision 1.44 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Jul 16 20:05:55 2007 UTC (12 years, 5 months ago) by parrello
Branch: MAIN
Changes since 1.43: +43 -74 lines
Diff to previous 1.43 , to selected 1.27

Updated to use a more PPO-friendly database structure.

Revision 1.43 - (view) (download) (as text) (annotate) - [select for diffs]
Fri May 11 06:23:51 2007 UTC (12 years, 7 months ago) by parrello
Branch: MAIN
Changes since 1.42: +4 -4 lines
Diff to previous 1.42 , to selected 1.27

Added support for the PDB and Ligand tables.

Revision 1.42 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Dec 20 20:03:50 2006 UTC (12 years, 11 months ago) by parrello
Branch: MAIN
Changes since 1.41: +4 -4 lines
Diff to previous 1.41 , to selected 1.27

Commented out the drug tables load. The drug tables are in the process of being redesigned.

Revision 1.41 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Nov 3 00:35:47 2006 UTC (13 years, 1 month ago) by parrello
Branch: MAIN
Changes since 1.40: +10 -4 lines
Diff to previous 1.40 , to selected 1.27

Added Drug Target tables to the load sequence.

Revision 1.40 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Sep 13 04:27:38 2006 UTC (13 years, 3 months ago) by parrello
Branch: MAIN
Changes since 1.39: +4 -8 lines
Diff to previous 1.39 , to selected 1.27

Removed the BBH step from the load.

Revision 1.39 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Aug 30 15:00:42 2006 UTC (13 years, 3 months ago) by parrello
Branch: MAIN
Changes since 1.38: +14 -70 lines
Diff to previous 1.38 , to selected 1.27

Added an option to specify a default location for the incoming gene file.

Revision 1.38 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Aug 2 23:51:19 2006 UTC (13 years, 4 months ago) by parrello
Branch: MAIN
Changes since 1.37: +1 -1 lines
Diff to previous 1.37 , to selected 1.27

Fixed a duplicate table name.

Revision 1.37 - (view) (download) (as text) (annotate) - [select for diffs]
Sun Jul 30 01:23:47 2006 UTC (13 years, 4 months ago) by parrello
Branch: MAIN
Changes since 1.36: +4 -0 lines
Diff to previous 1.36 , to selected 1.27

*** empty log message ***

Revision 1.36 - (view) (download) (as text) (annotate) - [select for diffs]
Sun Jul 30 01:19:37 2006 UTC (13 years, 4 months ago) by parrello
Branch: MAIN
Changes since 1.35: +4 -0 lines
Diff to previous 1.35 , to selected 1.27

Added support for protein families.

Revision 1.35 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Jul 5 21:48:00 2006 UTC (13 years, 5 months ago) by parrello
Branch: MAIN
Changes since 1.34: +2 -1 lines
Diff to previous 1.34 , to selected 1.27

Fixed some comments.

Revision 1.34 - (view) (download) (as text) (annotate) - [select for diffs]
Sat Jul 1 03:49:19 2006 UTC (13 years, 5 months ago) by parrello
Branch: MAIN
Changes since 1.33: +1 -1 lines
Diff to previous 1.33 , to selected 1.27

*** empty log message ***

Revision 1.33 - (view) (download) (as text) (annotate) - [select for diffs]
Sat Jul 1 03:27:33 2006 UTC (13 years, 5 months ago) by parrello
Branch: MAIN
Changes since 1.32: +1 -1 lines
Diff to previous 1.32 , to selected 1.27

*** empty log message ***

Revision 1.32 - (view) (download) (as text) (annotate) - [select for diffs]
Sat Jul 1 03:17:24 2006 UTC (13 years, 5 months ago) by parrello
Branch: MAIN
Changes since 1.31: +76 -53 lines
Diff to previous 1.31 , to selected 1.27

Added the ability to send a phone message when the load terminates for any reason.

Revision 1.31 - (view) (download) (as text) (annotate) - [select for diffs]
Sun Jun 25 07:34:46 2006 UTC (13 years, 5 months ago) by parrello
Branch: MAIN
Changes since 1.30: +8 -1 lines
Diff to previous 1.30 , to selected 1.27

Added support for mapped synonym IDs.

Revision 1.30 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Jun 5 05:51:51 2006 UTC (13 years, 6 months ago) by parrello
Branch: MAIN
Changes since 1.29: +5 -5 lines
Diff to previous 1.29 , to selected 1.27

Fixed some bad documentation.

Revision 1.29 - (view) (download) (as text) (annotate) - [select for diffs]
Sat May 13 14:51:39 2006 UTC (13 years, 7 months ago) by parrello
Branch: MAIN
Changes since 1.28: +13 -13 lines
Diff to previous 1.28 , to selected 1.27

Fixed a bug with the resume feature.

Revision 1.28 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Apr 19 03:34:15 2006 UTC (13 years, 7 months ago) by parrello
Branch: MAIN
Changes since 1.27: +6 -0 lines
Diff to previous 1.27

Added support for the new "hash-string" key type that creates a key from a digest of symbolic information.

Revision 1.27 - (view) (download) (as text) (annotate) - [selected]
Thu Apr 13 18:01:22 2006 UTC (13 years, 8 months ago) by parrello
Branch: MAIN
Changes since 1.26: +93 -13 lines
Diff to previous 1.26

Updated documentation and added more details to the instructions for loading.

Revision 1.26 - (view) (download) (as text) (annotate) - [select for diffs]
Sun Apr 2 17:33:52 2006 UTC (13 years, 8 months ago) by parrello
Branch: MAIN
Changes since 1.25: +2 -2 lines
Diff to previous 1.25 , to selected 1.27

Fixed documentation.

Revision 1.25 - (view) (download) (as text) (annotate) - [select for diffs]
Sun Apr 2 16:58:29 2006 UTC (13 years, 8 months ago) by parrello
Branch: MAIN
Changes since 1.24: +38 -5 lines
Diff to previous 1.24 , to selected 1.27

*** empty log message ***

Revision 1.24 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Mar 31 18:38:35 2006 UTC (13 years, 8 months ago) by parrello
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Changes since 1.23: +11 -11 lines
Diff to previous 1.23 , to selected 1.27

Fixed a bug in the resume feature.

Revision 1.23 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Mar 28 02:40:28 2006 UTC (13 years, 8 months ago) by parrello
Branch: MAIN
Changes since 1.22: +26 -1 lines
Diff to previous 1.22 , to selected 1.27

Upgraded to allow resuming failed loads.

Revision 1.22 - (view) (download) (as text) (annotate) - [select for diffs]
Sun Mar 26 17:28:20 2006 UTC (13 years, 8 months ago) by parrello
Branch: MAIN
Changes since 1.21: +3 -1 lines
Diff to previous 1.21 , to selected 1.27

Updated the comments.

Revision 1.21 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Feb 13 09:45:07 2006 UTC (13 years, 10 months ago) by parrello
Branch: MAIN
Changes since 1.20: +1 -1 lines
Diff to previous 1.20 , to selected 1.27

Fixed an error in the tracing setup.

Revision 1.20 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Jan 31 07:33:46 2006 UTC (13 years, 10 months ago) by parrello
Branch: MAIN
Changes since 1.19: +1 -13 lines
Diff to previous 1.19 , to selected 1.27

Added capability for creating databases.

Revision 1.19 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Jan 30 21:52:29 2006 UTC (13 years, 10 months ago) by parrello
Branch: MAIN
Changes since 1.18: +6 -1 lines
Diff to previous 1.18 , to selected 1.27

Hacked in a switch to load only the main table of a load group.

Revision 1.18 - (view) (download) (as text) (annotate) - [select for diffs]
Sun Jan 15 21:32:17 2006 UTC (13 years, 11 months ago) by parrello
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Changes since 1.17: +7 -3 lines
Diff to previous 1.17 , to selected 1.27

Converted to the new version of "StandardSetup".

Revision 1.17 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Jan 13 06:59:49 2006 UTC (13 years, 11 months ago) by parrello
Branch: MAIN
Changes since 1.16: +18 -11 lines
Diff to previous 1.16 , to selected 1.27

Converted to allow for a load-only mode that loads from pre-generated files.

Revision 1.16 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Dec 8 17:56:19 2005 UTC (14 years ago) by parrello
Branch: MAIN
Changes since 1.15: +2 -3 lines
Diff to previous 1.15 , to selected 1.27

Fixed a bad trace message.

Revision 1.15 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Dec 7 01:19:00 2005 UTC (14 years ago) by parrello
Branch: MAIN
Changes since 1.14: +6 -0 lines
Diff to previous 1.14 , to selected 1.27

Added code to insure the SproutData directory exists.

Revision 1.14 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Dec 7 00:49:16 2005 UTC (14 years ago) by parrello
Branch: MAIN
Changes since 1.13: +116 -56 lines
Diff to previous 1.13 , to selected 1.27

Added an option to create the database.

Revision 1.13 - (view) (download) (as text) (annotate) - [select for diffs]
Sat Nov 12 03:42:48 2005 UTC (14 years, 1 month ago) by parrello
Branch: MAIN
Changes since 1.12: +2 -8 lines
Diff to previous 1.12 , to selected 1.27

Fixed to properly load and test the "RoleOccursIn" relationship.

Revision 1.12 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Nov 7 20:29:46 2005 UTC (14 years, 1 month ago) by parrello
Branch: MAIN
Changes since 1.11: +60 -2 lines
Diff to previous 1.11 , to selected 1.27

Added documentation on how to load Sprout tables.

Revision 1.11 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Nov 2 21:45:08 2005 UTC (14 years, 1 month ago) by parrello
Branch: MAIN
Changes since 1.10: +2 -2 lines
Diff to previous 1.10 , to selected 1.27

Updated documentation.

Revision 1.10 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Oct 20 09:31:30 2005 UTC (14 years, 1 month ago) by parrello
Branch: MAIN
Changes since 1.9: +8 -4 lines
Diff to previous 1.9 , to selected 1.27

Added ability to load the tables automatically after generating the table data.

Revision 1.9 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Oct 13 15:28:53 2005 UTC (14 years, 2 months ago) by parrello
Branch: MAIN
Changes since 1.8: +4 -2 lines
Diff to previous 1.8 , to selected 1.27

Modified to use the SFXlate->new_sprout_only construct for connecting to Sprout so that it uses the same XML file as most Sprout applications.

Revision 1.8 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Oct 12 03:01:41 2005 UTC (14 years, 2 months ago) by parrello
Branch: MAIN
Changes since 1.7: +11 -1 lines
Diff to previous 1.7 , to selected 1.27

Added support for Reaction and Compound tables.

Revision 1.7 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Sep 14 09:57:27 2005 UTC (14 years, 3 months ago) by parrello
Branch: MAIN
Changes since 1.6: +7 -4 lines
Diff to previous 1.6 , to selected 1.27

Added a limited (and hopefully faster) load mode for features.

Revision 1.6 - (view) (download) (as text) (annotate) - [select for diffs]
Sun Sep 11 17:34:05 2005 UTC (14 years, 3 months ago) by parrello
Branch: MAIN
Changes since 1.5: +1 -1 lines
Diff to previous 1.5 , to selected 1.27

Fixed typo in the sprout constructor.

Revision 1.5 - (view) (download) (as text) (annotate) - [select for diffs]
Sun Sep 11 17:29:52 2005 UTC (14 years, 3 months ago) by parrello
Branch: MAIN
Changes since 1.4: +2 -3 lines
Diff to previous 1.4 , to selected 1.27

Updated to allow for situations where the sprout database does not exist yet.

Revision 1.4 - (view) (download) (as text) (annotate) - [select for diffs]
Sun Sep 11 17:06:21 2005 UTC (14 years, 3 months ago) by parrello
Branch: MAIN
Changes since 1.3: +9 -2 lines
Diff to previous 1.3 , to selected 1.27

Added support for additional table groups.

Revision 1.3 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Sep 9 14:54:44 2005 UTC (14 years, 3 months ago) by parrello
Branch: MAIN
Changes since 1.2: +36 -13 lines
Diff to previous 1.2 , to selected 1.27

Removed unnecessary reference to "TestUtils".
Added ability to load table groups and source information.

Revision 1.2 - (view) (download) (as text) (annotate) - [select for diffs]
Sun Aug 14 23:32:08 2005 UTC (14 years, 4 months ago) by parrello
Branch: MAIN
Changes since 1.1: +25 -2 lines
Diff to previous 1.1 , to selected 1.27

Added direct Sprout loading facility.

Revision 1.1 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Jul 27 20:05:24 2005 UTC (14 years, 4 months ago) by parrello
Branch: MAIN
Diff to selected 1.27

Added this script for loading data directly from FIG to Sprout.

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