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revision 1.47, Tue Feb 5 05:04:26 2008 UTC revision 1.48, Tue Sep 9 21:02:10 2008 UTC
# Line 132  Line 132 
132    
133  Loads B<Subsystem>, B<Role>, B<SSCell>, B<ContainsFeature>, B<IsGenomeOf>,  Loads B<Subsystem>, B<Role>, B<SSCell>, B<ContainsFeature>, B<IsGenomeOf>,
134  B<IsRoleOf>, B<OccursInSubsystem>, B<ParticipatesIn>, B<HasSSCell>,  B<IsRoleOf>, B<OccursInSubsystem>, B<ParticipatesIn>, B<HasSSCell>,
135  B<Catalyzes>, B<ConsistsOfRoles>, B<RoleSubset>, B<HasRoleSubset>,  B<ConsistsOfRoles>, B<RoleSubset>, B<HasRoleSubset>,
136  B<ConsistsOfGenomes>, B<GenomeSubset>, B<HasGenomeSubset>, B<Diagram>,  B<ConsistsOfGenomes>, B<GenomeSubset>, B<HasGenomeSubset>, B<Diagram>,
137  B<RoleOccursIn>, B<SubSystemClass>, B<RoleEC>, B<IsIdentifiedByEC>,  B<RoleOccursIn>, B<SubSystemClass>, B<RoleEC>, B<IsIdentifiedByEC>, and
138  B<ContainsFeature>.  B<ContainsFeature>.
139    
140  =item Annotation  =item Annotation
141    
142  Loads B<SproutUser>, B<UserAccess>, B<Annotation>, B<IsTargetOfAnnotation>,  Loads B<SproutUser>, B<UserAccess>, B<Annotation>, B<IsTargetOfAnnotation>, and
143  B<MadeAnnotation>.  B<MadeAnnotation>.
144    
145  =item Property  =item Property
146    
147  Loads B<Property>, B<HasProperty>.  Loads B<Property>, and B<HasProperty>.
148    
149  =item Group  =item Group
150    
# Line 152  Line 152 
152    
153  =item Source  =item Source
154    
155  Loads B<Source>, B<ComesFrom>, B<SourceURL>.  Loads B<Source>, B<ComesFrom>, and B<SourceURL>.
   
 =item External  
   
 Loads B<ExternalAliasOrg>, B<ExternalAliasFunc>.  
156    
157  =item Reaction  =item Reaction
158    
159  Loads B<ReactionURL>, B<Compound>, B<CompoundName>,  Loads B<ReactionURL>, B<Compound>, B<CompoundName>,
160  B<CompoundCAS>, B<IsAComponentOf>, B<Reaction>.  B<CompoundCAS>, B<IsAComponentOf>, B<Reaction>, B<Scenario>, B<IsInputFor>,
161    B<IsOutputOf>, B<IsOnDiagram>, and B<Catalyzes>.
162    
163  =item Synonym  =item Synonym
164    
# Line 255  Line 252 
252    
253  # This is a list of the load groups in their natural order. We'll go through these in sequence, processing  # This is a list of the load groups in their natural order. We'll go through these in sequence, processing
254  # the ones the user asks for.  # the ones the user asks for.
255  my @LoadGroups = qw(Genome Feature Subsystem Property Annotation Source External Reaction Synonym Family Drug);  my @LoadGroups = qw(Genome Subsystem Property Annotation Source Reaction Synonym Family Drug Feature);
256    
257  # Get the command-line parameters and options.  # Get the command-line parameters and options.
258  my ($options, @parameters) = StandardSetup(['SproutLoad', 'ERDBLoad', 'Stats',  my ($options, @parameters) = StandardSetup(['SproutLoad', 'ERDBLoad', 'Stats',
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