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revision 1.29, Sat May 13 14:51:39 2006 UTC revision 1.37, Sun Jul 30 01:23:47 2006 UTC
# Line 214  Line 214 
214    
215  Loads B<Genome>, B<HasContig>, B<Contig>, B<IsMadeUpOf>, and B<Sequence>.  Loads B<Genome>, B<HasContig>, B<Contig>, B<IsMadeUpOf>, and B<Sequence>.
216    
 =item Coupling  
   
 Loads B<Coupling>, B<IsEvidencedBy>, B<PCH>, B<ParticipatesInCoupling>,  
 B<UsesAsEvidence>.  
   
217  =item Feature  =item Feature
218    
219  Loads B<Feature>, B<FeatureAlias>, B<FeatureTranslation>, B<FeatureUpstream>,  Loads B<Feature>, B<FeatureAlias>, B<FeatureTranslation>, B<FeatureUpstream>,
220  B<IsLocatedIn>, B<FeatureLink>.  B<IsLocatedIn>, B<FeatureLink>.
221    
222    =item Coupling
223    
224    Loads B<Coupling>, B<IsEvidencedBy>, B<PCH>, B<ParticipatesInCoupling>,
225    B<UsesAsEvidence>.
226    
227  =item Subsystem  =item Subsystem
228    
229  Loads B<Subsystem>, B<Role>, B<SSCell>, B<ContainsFeature>, B<IsGenomeOf>,  Loads B<Subsystem>, B<Role>, B<SSCell>, B<ContainsFeature>, B<IsGenomeOf>,
# Line 262  Line 262 
262  Loads B<ReactionURL>, B<Compound>, B<CompoundName>,  Loads B<ReactionURL>, B<Compound>, B<CompoundName>,
263  B<CompoundCAS>, B<IsAComponentOf>, B<Reaction>.  B<CompoundCAS>, B<IsAComponentOf>, B<Reaction>.
264    
265    =item Synonym
266    
267    Loads B<SynonymGroup> and B<IsSynonymGroupFor>.
268    
269    =item Family
270    
271    Loads B<Family> and B<ContainsFeature>.
272    
273  =item *  =item *
274    
275  Loads all of the above tables.  Loads all of the above tables.
# Line 290  Line 298 
298    
299  =item user  =item user
300    
301  Suffix to use for trace, output, and error files created in  Suffix to use for trace, output, and error files created.
302    
303  =item dbLoad  =item dbLoad
304    
# Line 324  Line 332 
332    
333  Trace SQL statements.  Trace SQL statements.
334    
335    =item phone
336    
337    Phone number to message when the load finishes.
338    
339  =back  =back
340    
341  =cut  =cut
# Line 350  Line 362 
362                                                loadOnly => [0, "load the database from previously generated files"],                                                loadOnly => [0, "load the database from previously generated files"],
363                                                primaryOnly => [0, "only process the group's main entity"],                                                primaryOnly => [0, "only process the group's main entity"],
364                                                resume => [0, "resume a complete load starting with the first group specified in the parameter list"],                                                resume => [0, "resume a complete load starting with the first group specified in the parameter list"],
365                                                  phone => ["", "phone number (international format) to call when load finishes"],
366                                              },                                              },
367                                              "<group1> <group2> ...",                                              "<group1> <group2> ...",
368                                              @ARGV);                                              @ARGV);
# Line 374  Line 387 
387  if ($resume && @parameters > 1) {  if ($resume && @parameters > 1) {
388      Confess("If resume=1, only one load group can be specified.");      Confess("If resume=1, only one load group can be specified.");
389  } elsif (! @parameters) {  } elsif (! @parameters) {
390      Confess("No load groups were specified.");      Trace("No load groups were specified.") if T(0);
391  }  }
392    # Set a variable to contain return type information.
393    my $rtype;
394    # Insure we catch errors.
395    eval {
396  # Process the parameters.  # Process the parameters.
397  for my $group (@parameters) {  for my $group (@parameters) {
398      Trace("Processing load group $group.") if T(2);      Trace("Processing load group $group.") if T(2);
# Line 424  Line 441 
441          $spl->LoadReactionData();          $spl->LoadReactionData();
442          $group = ResumeCheck($resume, $group);          $group = ResumeCheck($resume, $group);
443      }      }
444            if ($group eq 'Synonym' || $group eq '*') {
445                $spl->LoadSynonymData();
446                $group = ResumeCheck($resume, $group);
447  }  }
448            if ($group eq 'Family' || $group eq '*') {
449                $spl->LoadFamilyData();
450                $group = ResumeCheck($resume, $group);
451            }
452        }
453    };
454    if ($@) {
455        Trace("Load failed with error: $@") if T(0);
456        $rtype = "error";
457    } else {
458  Trace("Load complete.") if T(2);  Trace("Load complete.") if T(2);
459        $rtype = "no error";
460    }
461    if ($options->{phone}) {
462        my $msgID = Tracer::SendSMS($options->{phone}, "Sprout load terminated with $rtype.");
463        if ($msgID) {
464            Trace("Phone message sent with ID $msgID.") if T(2);
465        } else {
466            Trace("Phone message not sent.") if T(2);
467        }
468    }
469    
470  # If the resume flag is set, return "*", else return "".  # If the resume flag is set, return "*", else return "".
471  sub ResumeCheck {  sub ResumeCheck {

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