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revision 1.17, Thu Jul 13 07:08:42 2006 UTC revision 1.18, Thu Aug 10 07:34:13 2006 UTC
# Line 190  Line 190 
190              # the genome.              # the genome.
191              my $assignHash = $sprout->GenomeAssignments($genomeID);              my $assignHash = $sprout->GenomeAssignments($genomeID);
192              # Next, we get all of the features in the genome that belong to a              # Next, we get all of the features in the genome that belong to a
193              # subsystem. This involves a query via the subsystem spreadsheet.              # subsystem.
194              my %ssHash = map { $_ => 1 } $sprout->GetFlat(['IsGenomeOf', 'ContainsFeature'],              my %ssHash = $sprout->GenomeSubsystemData($genomeID);
                                                     "IsGenomeOf(from-link) = ?",  
                                                     [$genomeID], 'ContainsFeature(to-link)');  
195              # Create a hash to track the four categories. "s" or "n" indicates              # Create a hash to track the four categories. "s" or "n" indicates
196              # in or out of a subsystem. "1" or "0" indicates hypothetical or              # in or out of a subsystem. "1" or "0" indicates hypothetical or
197              # real.              # real.

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