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revision 1.11, Mon Jan 24 03:52:18 2011 UTC revision 1.12, Sun Feb 13 13:02:30 2011 UTC
# Line 66  Line 66 
66      my ($class, $erdb, $options) = @_;      my ($class, $erdb, $options) = @_;
67      # Create the table list.      # Create the table list.
68      my @tables = sort qw(Feature FeatureEssential FeatureEvidence FeatureLink      my @tables = sort qw(Feature FeatureEssential FeatureEvidence FeatureLink
69                           FeatureVirulent IsOwnerOf IsLocatedIn Identifies                           FeatureVirulent IsOwnerOf IsLocatedIn IsIdentifiedBy
70                           Identifier IsNamedBy ProteinSequence Concerns                           Identifier IsNamedBy ProteinSequence Concerns
71                           IsAttachmentSiteFor Publication IsProteinFor                           IsAttachmentSiteFor Publication IsProteinFor
72                           Role RoleIndex IsFunctionalIn);                           Role RoleIndex IsFunctionalIn);
# Line 362  Line 362 
362                  $self->PutR(IsNamedBy => $proteinID, $aliasID);                  $self->PutR(IsNamedBy => $proteinID, $aliasID);
363              } else {              } else {
364                  # No. Connect it to the feature.                  # No. Connect it to the feature.
365                  $self->PutR(Identifies => $aliasID, $fid, conf => $aliasConf);                  $self->PutR(IsIdentifiedBy => $fid, $aliasID, conf => $aliasConf);
366              }              }
367          }          }
368          # Finally, this feature is an alias of itself.          # Finally, this feature is an alias of itself.
369          $self->PutE(Identifier => $fid, natural_form => $fid,          $self->PutE(Identifier => $fid, natural_form => $fid,
370                      source => 'SEED');                      source => 'SEED');
371          $self->PutR(Identifies => $fid, $fid, conf => 'A');          $self->PutR(IsIdentifiedBy => $fid, $fid, conf => 'A');
372      }      }
373  }  }
374    

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