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Revision 1.1 - (download) (as text) (annotate)
Sun Feb 22 03:28:31 2015 UTC (5 years, 1 month ago) by parrello
Branch: MAIN
Removed Shrub stuff. Updated ERDB for compatibility with Shrub DBD.

#!/usr/bin/perl -w

# Copyright (c) 2003-2006 University of Chicago and Fellowship
# for Interpretations of Genomes. All Rights Reserved.
# This file is part of the SEED Toolkit.
# The SEED Toolkit is free software. You can redistribute
# it and/or modify it under the terms of the SEED Toolkit
# Public License.
# You should have received a copy of the SEED Toolkit Public License
# along with this program; if not write to the University of Chicago
# at info@ci.uchicago.edu or the Fellowship for Interpretation of
# Genomes at veronika@thefig.info or download a copy from
# http://www.theseed.org/LICENSE.TXT.

package ERDBTypeShortString;

    use strict;
    use Tracer;
    use ERDB;
    use base qw(ERDBType);

=head1 ERDB Short String Type Definition

=head2 Introduction

This object represents the data type for short strings of 32 characters or less
with no odd control characters needing translation. Such strings are very limited,
but more of them can be crowded into an index and they do not require encoding or

=head3 new

    my $et = ERDBTypeShortString->new();

Construct a new ERDBTypeShortString descriptor.


sub new {
    # Get the parameters.
    my ($class) = @_;
    # Create the ERDBTypeShortString object.
    my $retVal = { };
    # Bless and return it.
    bless $retVal, $class;
    return $retVal;

=head2 Virtual Methods

=head3 averageLength

    my $value = $et->averageLength();

Return the average length of a data item of this field type when it is stored in the
database. This value is used to compute the expected size of a database table.


sub averageLength {
    return 24;

=head3 prettySortValue

    my $value = $et->prettySortValue();

Number indicating where fields of this type should go in relation to other
fields. The value should be somewhere between C<1> and C<5>. A value outside
that range will make terrible things happen.


sub prettySortValue() {
    return 1;

=head3 validate

    my $okFlag = $et->validate($value);

Return an error message if the specified value is invalid for this field type.

The parameters are as follows.

=over 4

=item value

Value of this type, for validation.

=item RETURN

Returns an empty string if the specified field is valid, and an error message



sub validate {
    # Get the parameters.
    my ($self, $value) = @_;
    # Assume it's valid until we prove otherwise.
    my $retVal = "";
    if (length($value) > 32) {
        $retVal = "Invalid short string field.";
    } elsif ($value =~ /[\%\\\x00-\x1F\x80-\xFF]/) {
        $retVal = "Invalid character in short-string field.";
    # Return the determination.
    return $retVal;

=head3 encode

    my $string = $et->encode($value, $mode);

Encode a value of this field type for storage in the database (or in a database load

The parameters are as follows.

=over 4

=item value

Value of this type, for encoding.

=item mode

TRUE if the value is being encoding for placement in a load file, FALSE if it
is being encoded for use as an SQL statement parameter. In most cases, the
encoding is the same for both modes.



sub encode {
    # Get the parameters.
    my ($self, $value, $mode) = @_;
    # Return the input value.
    return $value;

=head3 decode

    my $value = $et->decode($string);

Decode a string from the database into a value of this field type.

The parameters are as follows.

=over 4

=item string

String from the database to be decoded.

=item RETURN

Returns a value of the desired type.



sub decode {
    # Get the parameters.
    my ($self, $string) = @_;
    # Return the input value.
    return $string;

=head3 sqlType

    my $typeString = $et->sqlType($dbh);

Return the SQL data type for this field type.

=over 4

=item dbh

Open L<DBKernel> handle for the database in question. This is used when the
datatype may be different depending on the DBMS used.

=item RETURN

Returns the datatype string to be used when creating a field of this type in
an SQL table.



sub sqlType {
    return "VARCHAR(32)";

=head3 indexMod

    my $length = $et->indexMod();

Return the index modifier for this field type. The index modifier is the number of
characters to be indexed. If it is undefined, the field cannot be indexed. If it
is an empty string, the entire field is indexed. The default is an empty string.


sub indexMod {
    return '';

=head3 sortType

    my $letter = $et->sortType();

Return the sorting type for this field type. The sorting type is C<n> for integers,
C<g> for floating-point numbers, and the empty string for character fields.
The default is the empty string.


sub sortType {
    return "";

=head3 documentation

    my $docText = $et->documentation();

Return the documentation text for this field type. This should be in TWiki markup
format, though HTML will also work.


sub documentation() {
    return 'A short string of 32 or fewer chaaracters.';

=head3 name

    my $name = $et->name();

Return the name of this type, as it will appear in the XML database definition.


sub name() {
    return "short-string";

=head3 default

    my $defaultValue = $et->default();

Default value to be used for fields of this type if no default value is
specified in the database definition or in an L<ERDBLoadGroup/Put>
call during a loader operation. The default is undefined, which means
an error will be thrown during the load.


sub default {
    return '';

=head3 align

    my $alignment = $et->align();

Return the display alignment for fields of this type: either C<left>, C<right>, or
C<center>. The default is C<left>.


sub align {
    return 'left';


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