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Index of /Sprout

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File Rev. Age Author Last log entry
 Parent Directory        
ERDataBase/        
Shuffler/        
ERDBServer.cgi  1.1  10 years  olson  Commit these before I delete them again.
ERDBClient.pm  1.1  10 years  olson  Commit these before I delete them again.
FIGSproutTest.pl  1.3  14 years  olson  Fixes to put XML file in FIGdisk/FIG.
TargetCriterionCellLocation.pm  1.1  10 years  parrello  Target search support
ERDBTypeImage.pm  1.1  10 years  parrello  ERDB 2.0 support
BaseSaplingLoader.pm  1.1  10 years  parrello  Sapling support.
ExportAttributes.pl  1.2  11 years  parrello  Removed obsolete use clauses.
NmpdrPage.pm  1.1  13 years  parrello  Moved NMPDRPage to Sprout directory.
ERDBTypeString.pm  1.1  10 years  parrello  ERDB 2.0 support
SHTargetSearch.js  1.1  10 years  parrello  Target search support
ERDBTypeChar.pm  1.1  10 years  parrello  ERDB 2.0 support
Sapling.pm  1.2  10 years  parrello  Fixed a bug in InsertObject. Added support for demand-driven flow control.
TargetCriterionKeyword.pm  1.1  10 years  parrello  Target search support
NmpdrSearch.src  1.2  13 years  parrello  Fixed a bad URL.
TargetCriterionGeneric.pm  1.1  10 years  parrello  Target search support
NewSproutDBD.xml  1.1  10 years  parrello  Used for special loads.
LoadSproutTables.pl  1.49  11 years  parrello  Fixed some documentation, set the default trace level to 3.
ERDBTypeDate.pm  1.1  10 years  parrello  ERDB 2.0 support
LoadScript.pl  1.4  11 years  parrello  Removed obsolete use clauses.
SHDrugSearch.pm  1.12  10 years  parrello  Improved search result support.
ERDBQuery.pm  1.1  10 years  parrello  ERDB 2.0 support
CorePegs.pl  1.2  11 years  parrello  Added the "orgs" parameter to enable specifying all, all NMPDR, or only core gen...
ERDBObject.pm  1.7  10 years  parrello  ERDB 2.0 support
GenomeStats.pl  1.35  10 years  parrello  ERDB 2.0 support
NmpdrSearch.png  1.2  13 years  parrello  Changed to the globe thingy.
SHTargetSearch.pm  1.1  10 years  parrello  Target search support
GeneFile.pl  1.4  11 years  parrello  Removed obsolete use clauses.
DBConvert.pl  1.3  11 years  parrello  Removed obsolete use clauses.
SHOpSearch.pm  1.5  10 years  parrello  Improved search result support.
fig.htaccess  1.1  10 years  parrello  Blank htaccess file for future use.
NmpdrFix.pl  1.2  10 years  parrello  Improved site maintenance utilities.
CleanUp.pl  1.1  11 years  parrello  Added as a utility for cleaning out old temp files.
ERDBTypeLongString.pm  1.1  10 years  parrello  ERDB 2.0 support
AttrDBRefresh.pl  1.26  10 years  parrello  ERDB 2.0 support
RHLocations.pm  1.6  10 years  parrello  Improved search result support.
ERDBLoader.pl  1.6  10 years  parrello  ERDB 2.0 support
BaseSproutLoader.pm  1.4  10 years  parrello  ERDB 2.0 support
SubsystemSproutLoader.pm  1.2  10 years  parrello  ERDB 2.0 support
ShowCounts.pl  1.19  10 years  parrello  Improved site maintenance utilities.
ERDBPDocPage.pm  1.1  10 years  parrello  ERDB 2.0 support
SHGeneBbhSearch.pm  1.1  10 years  parrello  Improved search result support.
DupCheck.pl  1.3  11 years  parrello  Removed obsolete use clauses.
ERDBTypeBoolean.pm  1.1  10 years  parrello  ERDB 2.0 support
SproutSubsys.pm  1.21  10 years  parrello  Changed to support scenarios and to work faster.
SimBlocksDBD.xml  1.5  13 years  parrello  Replaced field "end" with "endpoint" to fix reserved word problem.
CustomAttributes.pm  1.41  10 years  parrello  Fixed a bug in InsertObject. Added support for demand-driven flow control.
SiteMeter.html  1.1  11 years  parrello  Added to make SiteMeter code more generally available.
AttrKeyConvert.pl  1.1  11 years  parrello  New script to convert old-format attribute dumps to the new format.
FeatureSproutLoader.pm  1.6  10 years  parrello  ERDB 2.0 support
GenomeSproutLoader.pm  1.2  10 years  parrello  ERDB 2.0 support
DrugSproutLoader.pm  1.2  10 years  parrello  ERDB 2.0 support
Contigs.pl  1.1  10 years  parrello  Tutorial examples.
NmpdrCheck.pl  1.2  10 years  parrello  Improved site maintenance utilities.
NmpdrSwitch.pl  1.2  11 years  parrello  Removed obsolete use clauses.
ResultHelper.pm  1.7  10 years  parrello  Improved search result support.
ERDBLoadGroup.pm  1.5  10 years  parrello  ERDB 2.0 support
TargetCriterionNull.pm  1.1  10 years  parrello  Target search support
indexCGI.pl  1.1  11 years  parrello  DirectoryIndex script for NMPDR.
ERDBLoadKill.pl  1.1  11 years  parrello  More tweaks to the load technology.
SproutDBD.xml  1.60  10 years  parrello  ERDB 2.0 support
SproutQuery.pm  1.2  13 years  parrello  Fxied obsolete references to the {_erdb} member.
SHToolSearch.pm  1.6  10 years  parrello  Improved search result support.
NewStuffCheck.pl  1.27  10 years  parrello  Improved site maintenance utilities.
CuttingDBD.xml  1.1  10 years  parrello  Tutorial examples.
AnnotationSproutLoader.pm  1.2  10 years  parrello  ERDB 2.0 support
DeleteGenomes.pl  1.3  11 years  parrello  Removed obsolete use clauses.
Blocks.txt  1.1.1.1  15 years  parrello  no message
NmpdrSetup.pl  1.2  10 years  parrello  ERDB 2.0 support
BioWords.pm  1.4  10 years  parrello  ERDB 2.0 support
LoadFIGTables.pl  1.2  11 years  parrello  Removed obsolete use clauses.
SHSigGenes.pm  1.20  10 years  parrello  Improved search result support.
ERDB.pm  1.112  10 years  parrello  Fixed a bug in InsertObject. Added support for demand-driven flow control.
Exceptions.txt  1.2  11 years  parrello  Added rules for "archael" and "bacterial".
AttributeReport.pl  1.5  10 years  parrello  ERDB 2.0 support
SynonymSproutLoader.pm  1.2  10 years  parrello  ERDB 2.0 support
SproutNotes.htm  1.1.1.1  15 years  parrello  no message
robots.txt  1.4  11 years  parrello  Removed some obsolete stuff.
startconsole.bat  1.1  14 years  parrello  Added this script for starting a FIG console on Windows machines.
ERDBTypeFloat.pm  1.1  10 years  parrello  ERDB 2.0 support
EvCodeRefresh.pl  1.4  11 years  parrello  Converted to new multi-table design concept for attributes.
ReactionSproutLoader.pm  1.2  10 years  parrello  ERDB 2.0 support
SetGroup.pl  1.2  11 years  parrello  Removed obsolete use clauses.
SHWordSearch.pm  1.11  10 years  parrello  Improved search result support.
ERDBTypeCounter.pm  1.1  10 years  parrello  ERDB 2.0 support
TargetCriterionCodeMatch.pm  1.1  10 years  parrello  Target search support
SpanishInquisition.pl  1.2  11 years  parrello  Converted to use StandardSetup.
NeighboringFeatures.pl  1.1  10 years  parrello  Tutorial examples.
StopWords.txt  1.1  11 years  parrello  Changes for v24 database.
ERDBLoad.pm  1.24  11 years  parrello  Changed to skip the sort step if a file is pre-sorted, and to catch errors that ...
FeatureSaplingLoader.pm  1.1  10 years  parrello  Sapling support.
ERDBFinder.pm  1.1  10 years  parrello  Target search support.
SHBatchSearch.pm  1.1  10 years  parrello  Improved search result support.
SproutLoad.pm  1.97  11 years  parrello  New loader technology.
ERDBTypeInteger.pm  1.1  10 years  parrello  ERDB 2.0 support
PropertySproutLoader.pm  1.2  10 years  parrello  ERDB 2.0 support
ERDBTypeText.pm  1.1  10 years  parrello  ERDB 2.0 support
NmpdrStatus.pl  1.2  11 years  parrello  Removed obsolete use clauses.
SourceSproutLoader.pm  1.2  10 years  parrello  ERDB 2.0 support
variation.html  1.1.1.1  15 years  parrello  no message
TargetCriterionConservedNeighborhood.pm  1.1  10 years  parrello  Target search support
Makefile  1.22  10 years  parrello  Added javascript support. Removed support for DBD documentation, which is accomp...
SetPermissions.pl  1.8  11 years  parrello  Removed obsolete use clauses.
ERDBTypeHashString.pm  1.1  10 years  parrello  ERDB 2.0 support
ERDBGenerate.pm  1.3  10 years  parrello  ERDB 2.0 support
Genomes.pl  1.1  10 years  parrello  Tutorial examples.
SproutStats.pl  1.2  13 years  parrello  Fxied obsolete references to the {_erdb} member.
TargetCriterionQuery.pm  1.1  10 years  parrello  Target search support
nmpdr.js  1.1  10 years  parrello  Moved from CSS directory.
BadIdFinder.pl  1.1  10 years  parrello  New program to find bad corresponding IDs in the SEED.
SHPropSearch.pm  1.8  10 years  parrello  Improved search result support.
DrugClean.pl  1.2  11 years  parrello  Removed obsolete use clauses.
ERDBGenerator.pl  1.5  10 years  parrello  ERDB 2.0 support
TargetCriterionSmallTable.pm  1.1  10 years  parrello  Target search support
HyperLink.pm  1.1  10 years  parrello  ERDB 2.0 support
SaplingConfig.xml  1.1  10 years  parrello  Sapling support.
AttrTime.pl  1.2  11 years  parrello  Removed obsolete use clauses.
AttributesDBD.xml  1.11  10 years  parrello  ERDB 2.0 support
MarkupTest.pl  1.3  11 years  parrello  Removed obsolete use clauses.
TargetCriterionExternalId.pm  1.1  10 years  parrello  Target search support
TargetCriterion.pm  1.1  10 years  parrello  Target search support
SearchHelper.pm  1.43  10 years  parrello  Improved search result support.
ERDBType.pm  1.1  10 years  parrello  ERDB 2.0 support
locations.pl  1.2  13 years  parrello  Fixed default trace level.
AttributeTest.pl  1.5  11 years  parrello  Changed so that it can run on a system without a FIG database.
SHOrgSumSearch.pm  1.1  10 years  parrello  Improved search result support.
ERDB.js  1.1  10 years  parrello  Target search support.
ERDBTypeLink.pm  1.1  10 years  parrello  ERDB 2.0 support
RHFeatures.pm  1.11  10 years  parrello  Target search support
TargetCriterionRange.pm  1.1  10 years  parrello  Target search support
SHGeneSearch.pm  1.4  10 years  parrello  Improved search result support.
TargetCriterionGeneId.pm  1.1  10 years  parrello  Target search support
ERDBTypeSemiBoolean.pm  1.1  10 years  parrello  ERDB 2.0 support
SubsystemSaplingLoader.pm  1.1  10 years  parrello  Sapling support.
SHSubSearch.pm  1.10  10 years  parrello  Improved search result support.
FigConfigFix.pl  1.5  11 years  parrello  Removed obsolete typing code.
ERDBTypeDNA.pm  1.1  10 years  parrello  ERDB 2.0 support
TargetCriterionEC.pm  1.1  10 years  parrello  Target search support
FidCheck.pm  1.3  11 years  parrello  Changed POD format for better compatability with Wiki.
SproutGFF.pl  1.3  11 years  parrello  Removed obsolete use clauses.
Sprout.pm  1.123  10 years  parrello  Fixed a bug in InsertObject. Added support for demand-driven flow control.
RHLigands.pm  1.4  10 years  parrello  Improved search result support.
GenomeSaplingLoader.pm  1.1  10 years  parrello  Sapling support.
ERDBTune.pl  1.1  11 years  parrello  New database utility script.
CompileTemplate.pl  1.5  11 years  parrello  Removed obsolete use clauses.
BBHCheck.pl  1.7  11 years  parrello  Fixed to only look at NMPDR genomes.
DBQuery.pm  1.9  11 years  parrello  Added trace messages.
SimLoad.pl  1.12  10 years  parrello  ERDB 2.0 support
SearchSkeleton.pm  1.2  10 years  parrello  Improved search result support.
DrugTargets.pm  1.2  10 years  parrello  ERDB 2.0 support
TagCount.pl  1.5  11 years  parrello  Changes for v24 database.
SimBlocks.pm  1.11  11 years  parrello  Changed POD format for better compatability with Wiki.
ContigDNA.pm  1.3  11 years  parrello  Fixed a POD error.
SingleTableLoad.pl  1.3  11 years  parrello  Removed obsolete use clauses.
SaplingDBD.xml  1.6  10 years  parrello  Sapling support.

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