[Bio] / Sprout Repository:
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Index of /Sprout

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File Rev. Age Author Last log entry
 Parent Directory        
ERDataBase/        
Shuffler/        
Makefile  1.20  11 years  golsen  Fix to path for pod2html
FIGSproutTest.pl  1.3  14 years  olson  Fixes to put XML file in FIGdisk/FIG.
ExportAttributes.pl  1.2  11 years  parrello  Removed obsolete use clauses.
NmpdrPage.pm  1.1  13 years  parrello  Moved NMPDRPage to Sprout directory.
NmpdrSearch.src  1.2  13 years  parrello  Fixed a bad URL.
LoadSproutTables.pl  1.47  11 years  parrello  Removed some incorrect comments.
LoadScript.pl  1.4  11 years  parrello  Removed obsolete use clauses.
SHDrugSearch.pm  1.11  12 years  parrello  Changed POD format for better compatability with Wiki.
CorePegs.pl  1.2  11 years  parrello  Added the "orgs" parameter to enable specifying all, all NMPDR, or only core gen...
ERDBObject.pm  1.5  11 years  parrello  Removed reference to AddToListMap.
GenomeStats.pl  1.33  11 years  parrello  Changed link to PEG definition page to the new, more compact style.
NmpdrSearch.png  1.2  13 years  parrello  Changed to the globe thingy.
GeneFile.pl  1.4  11 years  parrello  Removed obsolete use clauses.
DBConvert.pl  1.3  11 years  parrello  Removed obsolete use clauses.
SHOpSearch.pm  1.4  12 years  parrello  Changed POD format for better compatability with Wiki.
AttrDBRefresh.pl  1.23  11 years  parrello  Changed default load mode to CONCURRENT.
RHLocations.pm  1.4  12 years  parrello  Changed POD format for better compatability with Wiki.
ShowCounts.pl  1.16  11 years  parrello  Changed to use the new genome menu code for generating genome controls.
DupCheck.pl  1.3  11 years  parrello  Removed obsolete use clauses.
SproutSubsys.pm  1.15  11 years  parrello  Added stub for get_hope_reactions_for_genome.
SimBlocksDBD.xml  1.5  13 years  parrello  Replaced field "end" with "endpoint" to fix reserved word problem.
CustomAttributes.pm  1.32  11 years  parrello  Changed to do mass deletes and loads in bursts for better performance.
SiteMeter.html  1.1  12 years  parrello  Added to make SiteMeter code more generally available.
NmpdrSwitch.pl  1.2  11 years  parrello  Removed obsolete use clauses.
ResultHelper.pm  1.5  12 years  parrello  Changed POD format for better compatability with Wiki.
SproutDBD.xml  1.54  11 years  parrello  Added a table for keywords.
SproutQuery.pm  1.2  13 years  parrello  Fxied obsolete references to the {_erdb} member.
SHToolSearch.pm  1.5  12 years  parrello  Changed POD format for better compatability with Wiki.
NewStuffCheck.pl  1.26  11 years  parrello  Changed the style on a table header.
DeleteGenomes.pl  1.3  11 years  parrello  Removed obsolete use clauses.
Blocks.txt  1.1.1.1  15 years  parrello  no message
LoadFIGTables.pl  1.2  11 years  parrello  Removed obsolete use clauses.
SHSigGenes.pm  1.19  11 years  parrello  Fixed a typo.
ERDB.pm  1.98  11 years  parrello  Added support for shapes and issue tags.
AttributeReport.pl  1.4  11 years  parrello  Converted escapeHTML to safer Clean.
SproutNotes.htm  1.1.1.1  15 years  parrello  no message
robots.txt  1.3  11 years  parrello  Increased the crawl delay.
startconsole.bat  1.1  14 years  parrello  Added this script for starting a FIG console on Windows machines.
EvCodeRefresh.pl  1.2  11 years  parrello  Changed so that a missing evidence code file name is not an error.
SetGroup.pl  1.2  11 years  parrello  Removed obsolete use clauses.
SHWordSearch.pm  1.10  12 years  parrello  Changed POD format for better compatability with Wiki.
SpanishInquisition.pl  1.2  11 years  parrello  Converted to use StandardSetup.
ERDBLoad.pm  1.21  11 years  parrello  Added support for concurrent and low-priority loading.
SproutLoad.pm  1.92  11 years  parrello  Added code to pull the corresponding IDs into the feature keyword list.
NmpdrStatus.pl  1.2  11 years  parrello  Removed obsolete use clauses.
variation.html  1.1.1.1  15 years  parrello  no message
SetPermissions.pl  1.8  11 years  parrello  Removed obsolete use clauses.
SproutStats.pl  1.2  13 years  parrello  Fxied obsolete references to the {_erdb} member.
SHPropSearch.pm  1.7  12 years  parrello  Changed POD format for better compatability with Wiki.
DrugClean.pl  1.2  11 years  parrello  Removed obsolete use clauses.
AttrTime.pl  1.2  11 years  parrello  Removed obsolete use clauses.
AttributesDBD.xml  1.9  11 years  parrello  Fixed an error in the definition for the evidence class format field.
MarkupTest.pl  1.3  11 years  parrello  Removed obsolete use clauses.
SearchHelper.pm  1.40  11 years  parrello  Changed hint function to use the new wiki syntax for links.
locations.pl  1.2  13 years  parrello  Fixed default trace level.
AttributeTest.pl  1.5  11 years  parrello  Changed so that it can run on a system without a FIG database.
RHFeatures.pm  1.8  11 years  parrello  Changed viewer link to go to the seed viewer feature page.
SHGeneSearch.pm  1.3  12 years  parrello  Changed POD format for better compatability with Wiki.
SHSubSearch.pm  1.9  11 years  parrello  Changed title of page.
FigConfigFix.pl  1.3  11 years  parrello  Fixed to properly update the url_base configuration items.
FidCheck.pm  1.3  12 years  parrello  Changed POD format for better compatability with Wiki.
SproutGFF.pl  1.3  11 years  parrello  Removed obsolete use clauses.
Sprout.pm  1.112  11 years  parrello  Fixed a bug in the genome menu.
RHLigands.pm  1.3  12 years  parrello  Changed POD format for better compatability with Wiki.
NMPDRSetup.pl  1.11  11 years  parrello  Added KEGG map support.
CompileTemplate.pl  1.5  11 years  parrello  Removed obsolete use clauses.
BBHCheck.pl  1.6  11 years  parrello  Removed obsolete use clauses.
DBQuery.pm  1.8  12 years  parrello  Changed POD format for better compatability with Wiki.
SimLoad.pl  1.11  12 years  parrello  Changed POD format for better compatability with Wiki.
TagCount.pl  1.4  11 years  parrello  Added ability to specify an alternate database and a counter for features change...
SimBlocks.pm  1.11  12 years  parrello  Changed POD format for better compatability with Wiki.
ContigDNA.pm  1.3  11 years  parrello  Fixed a POD error.
SingleTableLoad.pl  1.3  11 years  parrello  Removed obsolete use clauses.
SaplingDBD.xml  1.1  11 years  parrello  Initial Sapling DBD.

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