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Index of /Sprout

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File Rev. Age Author Last log entry
 Parent Directory        
ERDataBase/        
Shuffler/        
AttrDBRefresh.pl  1.25  11 years  parrello  Added a new function to clean out duplicate entries.
AttrKeyConvert.pl  1.1  11 years  parrello  New script to convert old-format attribute dumps to the new format.
AttrTime.pl  1.2  11 years  parrello  Removed obsolete use clauses.
AttributeReport.pl  1.4  11 years  parrello  Converted escapeHTML to safer Clean.
AttributeTest.pl  1.5  11 years  parrello  Changed so that it can run on a system without a FIG database.
AttributesDBD.xml  1.10  11 years  parrello  Converted to new multi-table design concept for attributes.
BBHCheck.pl  1.7  11 years  parrello  Fixed to only look at NMPDR genomes.
BioWords.pm  1.2  11 years  parrello  Added tracing.
Blocks.txt  1.1.1.1  14 years  parrello  no message
CleanUp.pl  1.1  11 years  parrello  Added as a utility for cleaning out old temp files.
CompileTemplate.pl  1.5  11 years  parrello  Removed obsolete use clauses.
ContigDNA.pm  1.3  11 years  parrello  Fixed a POD error.
CorePegs.pl  1.2  11 years  parrello  Added the "orgs" parameter to enable specifying all, all NMPDR, or only core gen...
CustomAttributes.pm  1.36  11 years  parrello  Added new-line at EOF
DBConvert.pl  1.3  11 years  parrello  Removed obsolete use clauses.
DBQuery.pm  1.9  11 years  parrello  Added trace messages.
DeleteGenomes.pl  1.3  11 years  parrello  Removed obsolete use clauses.
DrugClean.pl  1.2  11 years  parrello  Removed obsolete use clauses.
DrugTargets.pm  1.1  11 years  parrello  New version of targets.cgi that works with the wiki.
DupCheck.pl  1.3  11 years  parrello  Removed obsolete use clauses.
ERDB.pm  1.103  11 years  parrello  Added trace messages.
ERDBLoad.pm  1.23  11 years  parrello  Changed to sort only one file at a time, and allocate a large sort buffer to spe...
ERDBObject.pm  1.6  11 years  parrello  Removed the obsolete new-record flag.
EvCodeRefresh.pl  1.4  11 years  parrello  Converted to new multi-table design concept for attributes.
Exceptions.txt  1.1  11 years  parrello  Exception list for keyword stemming.
ExportAttributes.pl  1.2  11 years  parrello  Removed obsolete use clauses.
FIGSproutTest.pl  1.3  14 years  olson  Fixes to put XML file in FIGdisk/FIG.
FidCheck.pm  1.3  11 years  parrello  Changed POD format for better compatability with Wiki.
FigConfigFix.pl  1.4  11 years  parrello  Revamped to fit the new NMPDR procedures.
GeneFile.pl  1.4  11 years  parrello  Removed obsolete use clauses.
GenomeStats.pl  1.33  11 years  parrello  Changed link to PEG definition page to the new, more compact style.
LoadFIGTables.pl  1.2  11 years  parrello  Removed obsolete use clauses.
LoadScript.pl  1.4  11 years  parrello  Removed obsolete use clauses.
LoadSproutTables.pl  1.49  11 years  parrello  Fixed some documentation, set the default trace level to 3.
Makefile  1.20  11 years  golsen  Fix to path for pod2html
MarkupTest.pl  1.3  11 years  parrello  Removed obsolete use clauses.
NMPDRSetup.pl  1.13  11 years  parrello  Converted to handle all the new craziness.
NewStuffCheck.pl  1.26  11 years  parrello  Changed the style on a table header.
NmpdrPage.pm  1.1  13 years  parrello  Moved NMPDRPage to Sprout directory.
NmpdrSearch.png  1.2  13 years  parrello  Changed to the globe thingy.
NmpdrSearch.src  1.2  13 years  parrello  Fixed a bad URL.
NmpdrStatus.pl  1.2  11 years  parrello  Removed obsolete use clauses.
NmpdrSwitch.pl  1.2  11 years  parrello  Removed obsolete use clauses.
RHFeatures.pm  1.9  11 years  parrello  Fixed URLs.
RHLigands.pm  1.3  11 years  parrello  Changed POD format for better compatability with Wiki.
RHLocations.pm  1.5  11 years  parrello  Fixed URLs.
ResultHelper.pm  1.6  11 years  parrello  Fixed URLs.
SHDrugSearch.pm  1.11  11 years  parrello  Changed POD format for better compatability with Wiki.
SHGeneSearch.pm  1.3  11 years  parrello  Changed POD format for better compatability with Wiki.
SHOpSearch.pm  1.4  11 years  parrello  Changed POD format for better compatability with Wiki.
SHPropSearch.pm  1.7  11 years  parrello  Changed POD format for better compatability with Wiki.
SHSigGenes.pm  1.19  11 years  parrello  Fixed a typo.
SHSubSearch.pm  1.9  11 years  parrello  Changed title of page.
SHToolSearch.pm  1.5  11 years  parrello  Changed POD format for better compatability with Wiki.
SHWordSearch.pm  1.10  11 years  parrello  Changed POD format for better compatability with Wiki.
SaplingDBD.xml  1.2  11 years  parrello  Still a work in progress.
SearchHelper.pm  1.41  11 years  parrello  Fixed URLs.
SearchSkeleton.pm  1.1  11 years  parrello  Old search code, repackaged for the NMPDR.
SetGroup.pl  1.2  11 years  parrello  Removed obsolete use clauses.
SetPermissions.pl  1.8  11 years  parrello  Removed obsolete use clauses.
ShowCounts.pl  1.17  11 years  parrello  Fixed to work with the wiki.
SimBlocks.pm  1.11  11 years  parrello  Changed POD format for better compatability with Wiki.
SimBlocksDBD.xml  1.5  13 years  parrello  Replaced field "end" with "endpoint" to fix reserved word problem.
SimLoad.pl  1.11  11 years  parrello  Changed POD format for better compatability with Wiki.
SingleTableLoad.pl  1.3  11 years  parrello  Removed obsolete use clauses.
SiteMeter.html  1.1  11 years  parrello  Added to make SiteMeter code more generally available.
SpanishInquisition.pl  1.2  11 years  parrello  Converted to use StandardSetup.
Sprout.pm  1.117  11 years  parrello  Added trace messages.
SproutDBD.xml  1.57  11 years  parrello  Changed some field names to use hyphens instead of underscores. We use hyphens e...
SproutGFF.pl  1.3  11 years  parrello  Removed obsolete use clauses.
SproutLoad.pm  1.94  11 years  parrello  Changed to specify the configuration files when creating the keyword object.
SproutNotes.htm  1.1.1.1  14 years  parrello  no message
SproutQuery.pm  1.2  13 years  parrello  Fxied obsolete references to the {_erdb} member.
SproutStats.pl  1.2  13 years  parrello  Fxied obsolete references to the {_erdb} member.
SproutSubsys.pm  1.19  11 years  parrello  Upgraded to be able to handle scenarios.
StopWords.txt  1.1  11 years  parrello  Changes for v24 database.
TagCount.pl  1.5  11 years  parrello  Changes for v24 database.
indexCGI.pl  1.1  11 years  parrello  DirectoryIndex script for NMPDR.
locations.pl  1.2  12 years  parrello  Fixed default trace level.
robots.txt  1.4  11 years  parrello  Removed some obsolete stuff.
startconsole.bat  1.1  14 years  parrello  Added this script for starting a FIG console on Windows machines.
variation.html  1.1.1.1  14 years  parrello  no message

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