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File Rev. Age Author Last log entry
 Parent Directory        
CustomAttributes.pm  1.39  11 years  parrello  Fixed bug in value-based queries.
NmpdrSetup.pl  1.1  11 years  parrello  New name, old script.
BioWords.pm  1.3  11 years  parrello  Fixed to strip the silent 'e' from the end of a word.
Exceptions.txt  1.2  11 years  parrello  Added rules for "archael" and "bacterial".
FeatureSproutLoader.pm  1.5  11 years  parrello  Fixed handling of hyphenated words.
RHFeatures.pm  1.10  11 years  parrello  Removed obsolete GBrowse stuff. Added aliases and assignment data to fasta downl...
SearchHelper.pm  1.42  11 years  parrello  Added support for comment labels in FASTA downloads.
SproutSubsys.pm  1.20  11 years  parrello  Added a trace message.
Sprout.pm  1.121  11 years  parrello  Fixed a bug in the Genome menu buttons.
SaplingDBD.xml  1.5  11 years  parrello  Fixed color of IsTerminusOf.
NmpdrFix.pl  1.1  11 years  parrello  New utility to change the FigFam release pointer.
NmpdrCheck.pl  1.1  11 years  parrello  New script to do sanity checks.
FigConfigFix.pl  1.5  11 years  parrello  Removed obsolete typing code.
ERDBTune.pl  1.1  11 years  parrello  New database utility script.
ERDBLoader.pl  1.5  11 years  parrello  No discernible change.
SubsystemSproutLoader.pm  1.1  11 years  parrello  New Sprout loaders.
GenomeSproutLoader.pm  1.1  11 years  parrello  New Sprout loaders.
DrugSproutLoader.pm  1.1  11 years  parrello  New Sprout loaders.
ReactionSproutLoader.pm  1.1  11 years  parrello  New Sprout loaders.
PropertySproutLoader.pm  1.1  11 years  parrello  New Sprout loaders.
SourceSproutLoader.pm  1.1  11 years  parrello  New Sprout loaders.
AnnotationSproutLoader.pm  1.1  11 years  parrello  New loader for Sprout
SynonymSproutLoader.pm  1.1  11 years  parrello  New loader for Sprout
ERDBLoadGroup.pm  1.4  11 years  parrello  More loading bug fixes.
ERDB.pm  1.110  11 years  parrello  More loading bug fixes.
ERDBGenerate.pm  1.2  11 years  parrello  More loading bug fixes.
ERDBGenerator.pl  1.4  11 years  parrello  More loading bug fixes.
ShowCounts.pl  1.18  11 years  parrello  Added a trace message.
SproutDBD.xml  1.59  11 years  parrello  Fixed spelling of "van der waals energy" field.
BaseSproutLoader.pm  1.3  11 years  parrello  General load technology fixes.
ERDBLoadKill.pl  1.1  11 years  parrello  More tweaks to the load technology.
SproutLoad.pm  1.97  11 years  parrello  New loader technology.
GenomeStats.pl  1.34  11 years  parrello  Removed all the links from the statistics table: they all go to pages that no lo...
ERDBLoad.pm  1.24  11 years  parrello  Changed to skip the sort step if a file is pre-sorted, and to catch errors that ...
indexCGI.pl  1.1  11 years  parrello  DirectoryIndex script for NMPDR.
CleanUp.pl  1.1  11 years  parrello  Added as a utility for cleaning out old temp files.
DBQuery.pm  1.9  11 years  parrello  Added trace messages.
ERDBObject.pm  1.6  11 years  parrello  Removed the obsolete new-record flag.
LoadSproutTables.pl  1.49  11 years  parrello  Fixed some documentation, set the default trace level to 3.
robots.txt  1.4  11 years  parrello  Removed some obsolete stuff.
StopWords.txt  1.1  11 years  parrello  Changes for v24 database.
TagCount.pl  1.5  11 years  parrello  Changes for v24 database.
SearchSkeleton.pm  1.1  11 years  parrello  Old search code, repackaged for the NMPDR.
RHLocations.pm  1.5  11 years  parrello  Fixed URLs.
ResultHelper.pm  1.6  11 years  parrello  Fixed URLs.
BBHCheck.pl  1.7  11 years  parrello  Fixed to only look at NMPDR genomes.
AttrDBRefresh.pl  1.25  11 years  parrello  Added a new function to clean out duplicate entries.
DrugTargets.pm  1.1  11 years  parrello  New version of targets.cgi that works with the wiki.
AttrKeyConvert.pl  1.1  11 years  parrello  New script to convert old-format attribute dumps to the new format.
EvCodeRefresh.pl  1.4  11 years  parrello  Converted to new multi-table design concept for attributes.
AttributesDBD.xml  1.10  11 years  parrello  Converted to new multi-table design concept for attributes.
Makefile  1.20  11 years  golsen  Fix to path for pod2html
AttributeReport.pl  1.4  11 years  parrello  Converted escapeHTML to safer Clean.
SpanishInquisition.pl  1.2  11 years  parrello  Converted to use StandardSetup.
SHSubSearch.pm  1.9  11 years  parrello  Changed title of page.
SHSigGenes.pm  1.19  11 years  parrello  Fixed a typo.
CorePegs.pl  1.2  12 years  parrello  Added the "orgs" parameter to enable specifying all, all NMPDR, or only core gen...
LoadScript.pl  1.4  12 years  parrello  Removed obsolete use clauses.
ExportAttributes.pl  1.2  12 years  parrello  Removed obsolete use clauses.
GeneFile.pl  1.4  12 years  parrello  Removed obsolete use clauses.
DBConvert.pl  1.3  12 years  parrello  Removed obsolete use clauses.
DupCheck.pl  1.3  12 years  parrello  Removed obsolete use clauses.
DeleteGenomes.pl  1.3  12 years  parrello  Removed obsolete use clauses.
LoadFIGTables.pl  1.2  12 years  parrello  Removed obsolete use clauses.
SetGroup.pl  1.2  12 years  parrello  Removed obsolete use clauses.
SetPermissions.pl  1.8  12 years  parrello  Removed obsolete use clauses.
DrugClean.pl  1.2  12 years  parrello  Removed obsolete use clauses.
AttrTime.pl  1.2  12 years  parrello  Removed obsolete use clauses.
MarkupTest.pl  1.3  12 years  parrello  Removed obsolete use clauses.
SproutGFF.pl  1.3  12 years  parrello  Removed obsolete use clauses.
CompileTemplate.pl  1.5  12 years  parrello  Removed obsolete use clauses.
SingleTableLoad.pl  1.3  12 years  parrello  Removed obsolete use clauses.
NmpdrSwitch.pl  1.2  12 years  parrello  Removed obsolete use clauses.
NmpdrStatus.pl  1.2  12 years  parrello  Removed obsolete use clauses.
NewStuffCheck.pl  1.26  12 years  parrello  Changed the style on a table header.
ContigDNA.pm  1.3  12 years  parrello  Fixed a POD error.
AttributeTest.pl  1.5  12 years  parrello  Changed so that it can run on a system without a FIG database.
SHDrugSearch.pm  1.11  12 years  parrello  Changed POD format for better compatability with Wiki.
SHOpSearch.pm  1.4  12 years  parrello  Changed POD format for better compatability with Wiki.
SHToolSearch.pm  1.5  12 years  parrello  Changed POD format for better compatability with Wiki.
SHWordSearch.pm  1.10  12 years  parrello  Changed POD format for better compatability with Wiki.
SHPropSearch.pm  1.7  12 years  parrello  Changed POD format for better compatability with Wiki.
SHGeneSearch.pm  1.3  12 years  parrello  Changed POD format for better compatability with Wiki.
FidCheck.pm  1.3  12 years  parrello  Changed POD format for better compatability with Wiki.
RHLigands.pm  1.3  12 years  parrello  Changed POD format for better compatability with Wiki.
SimLoad.pl  1.11  12 years  parrello  Changed POD format for better compatability with Wiki.
SimBlocks.pm  1.11  12 years  parrello  Changed POD format for better compatability with Wiki.
SiteMeter.html  1.1  12 years  parrello  Added to make SiteMeter code more generally available.
locations.pl  1.2  13 years  parrello  Fixed default trace level.
NmpdrSearch.png  1.2  13 years  parrello  Changed to the globe thingy.
NmpdrSearch.src  1.2  13 years  parrello  Fixed a bad URL.
NmpdrPage.pm  1.1  13 years  parrello  Moved NMPDRPage to Sprout directory.
SproutQuery.pm  1.2  13 years  parrello  Fxied obsolete references to the {_erdb} member.
SproutStats.pl  1.2  13 years  parrello  Fxied obsolete references to the {_erdb} member.
SimBlocksDBD.xml  1.5  14 years  parrello  Replaced field "end" with "endpoint" to fix reserved word problem.
startconsole.bat  1.1  14 years  parrello  Added this script for starting a FIG console on Windows machines.
FIGSproutTest.pl  1.3  15 years  olson  Fixes to put XML file in FIGdisk/FIG.
Blocks.txt  15 years  parrello  no message
SproutNotes.htm  15 years  parrello  no message
variation.html  15 years  parrello  no message

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