[Bio] / Sprout Repository:
ViewVC logotype

Index of /Sprout

Files shown:154 (Show 160 dead files)
Sticky Tag:


File Rev. Age Author Last log entry
 Parent Directory        
ERDataBase/        
Shuffler/        
AnnotationSproutLoader.pm  1.2  10 years  parrello  ERDB 2.0 support
AttrDBRefresh.pl  1.26  10 years  parrello  ERDB 2.0 support
AttrKeyConvert.pl  1.1  11 years  parrello  New script to convert old-format attribute dumps to the new format.
AttrTime.pl  1.2  11 years  parrello  Removed obsolete use clauses.
AttributeReport.pl  1.5  10 years  parrello  ERDB 2.0 support
AttributeTest.pl  1.5  11 years  parrello  Changed so that it can run on a system without a FIG database.
AttributesDBD.xml  1.11  10 years  parrello  ERDB 2.0 support
BBHCheck.pl  1.7  11 years  parrello  Fixed to only look at NMPDR genomes.
BadIdFinder.pl  1.1  10 years  parrello  New program to find bad corresponding IDs in the SEED.
BaseSaplingLoader.pm  1.1  10 years  parrello  Sapling support.
BaseSproutLoader.pm  1.4  10 years  parrello  ERDB 2.0 support
BioWords.pm  1.4  10 years  parrello  ERDB 2.0 support
Blocks.txt  1.1.1.1  15 years  parrello  no message
CleanUp.pl  1.1  11 years  parrello  Added as a utility for cleaning out old temp files.
CompileTemplate.pl  1.5  11 years  parrello  Removed obsolete use clauses.
ContigDNA.pm  1.3  11 years  parrello  Fixed a POD error.
Contigs.pl  1.1  10 years  parrello  Tutorial examples.
CorePegs.pl  1.2  11 years  parrello  Added the "orgs" parameter to enable specifying all, all NMPDR, or only core gen...
CustomAttributes.pm  1.41  10 years  parrello  Fixed a bug in InsertObject. Added support for demand-driven flow control.
CuttingDBD.xml  1.1  10 years  parrello  Tutorial examples.
DBConvert.pl  1.3  11 years  parrello  Removed obsolete use clauses.
DBQuery.pm  1.9  11 years  parrello  Added trace messages.
DeleteGenomes.pl  1.3  11 years  parrello  Removed obsolete use clauses.
DrugClean.pl  1.2  11 years  parrello  Removed obsolete use clauses.
DrugSproutLoader.pm  1.2  10 years  parrello  ERDB 2.0 support
DrugTargets.pm  1.2  10 years  parrello  ERDB 2.0 support
DupCheck.pl  1.3  11 years  parrello  Removed obsolete use clauses.
ERDB.js  1.1  10 years  parrello  Target search support.
ERDB.pm  1.112  10 years  parrello  Fixed a bug in InsertObject. Added support for demand-driven flow control.
ERDBClient.pm  1.1  10 years  olson  Commit these before I delete them again.
ERDBFinder.pm  1.1  10 years  parrello  Target search support.
ERDBGenerate.pm  1.3  10 years  parrello  ERDB 2.0 support
ERDBGenerator.pl  1.5  10 years  parrello  ERDB 2.0 support
ERDBLoad.pm  1.24  11 years  parrello  Changed to skip the sort step if a file is pre-sorted, and to catch errors that ...
ERDBLoadGroup.pm  1.5  10 years  parrello  ERDB 2.0 support
ERDBLoadKill.pl  1.1  11 years  parrello  More tweaks to the load technology.
ERDBLoader.pl  1.6  10 years  parrello  ERDB 2.0 support
ERDBObject.pm  1.7  10 years  parrello  ERDB 2.0 support
ERDBPDocPage.pm  1.1  10 years  parrello  ERDB 2.0 support
ERDBQuery.pm  1.1  10 years  parrello  ERDB 2.0 support
ERDBServer.cgi  1.1  10 years  olson  Commit these before I delete them again.
ERDBTune.pl  1.1  11 years  parrello  New database utility script.
ERDBType.pm  1.1  10 years  parrello  ERDB 2.0 support
ERDBTypeBoolean.pm  1.1  10 years  parrello  ERDB 2.0 support
ERDBTypeChar.pm  1.1  10 years  parrello  ERDB 2.0 support
ERDBTypeCounter.pm  1.1  10 years  parrello  ERDB 2.0 support
ERDBTypeDNA.pm  1.1  10 years  parrello  ERDB 2.0 support
ERDBTypeDate.pm  1.1  10 years  parrello  ERDB 2.0 support
ERDBTypeFloat.pm  1.1  10 years  parrello  ERDB 2.0 support
ERDBTypeHashString.pm  1.1  10 years  parrello  ERDB 2.0 support
ERDBTypeImage.pm  1.1  10 years  parrello  ERDB 2.0 support
ERDBTypeInteger.pm  1.1  10 years  parrello  ERDB 2.0 support
ERDBTypeLink.pm  1.1  10 years  parrello  ERDB 2.0 support
ERDBTypeLongString.pm  1.1  10 years  parrello  ERDB 2.0 support
ERDBTypeSemiBoolean.pm  1.1  10 years  parrello  ERDB 2.0 support
ERDBTypeString.pm  1.1  10 years  parrello  ERDB 2.0 support
ERDBTypeText.pm  1.1  10 years  parrello  ERDB 2.0 support
EvCodeRefresh.pl  1.4  11 years  parrello  Converted to new multi-table design concept for attributes.
Exceptions.txt  1.2  11 years  parrello  Added rules for "archael" and "bacterial".
ExportAttributes.pl  1.2  11 years  parrello  Removed obsolete use clauses.
FIGSproutTest.pl  1.3  14 years  olson  Fixes to put XML file in FIGdisk/FIG.
FeatureSaplingLoader.pm  1.1  10 years  parrello  Sapling support.
FeatureSproutLoader.pm  1.6  10 years  parrello  ERDB 2.0 support
FidCheck.pm  1.3  11 years  parrello  Changed POD format for better compatability with Wiki.
FigConfigFix.pl  1.5  11 years  parrello  Removed obsolete typing code.
GeneFile.pl  1.4  11 years  parrello  Removed obsolete use clauses.
GenomeSaplingLoader.pm  1.1  10 years  parrello  Sapling support.
GenomeSproutLoader.pm  1.2  10 years  parrello  ERDB 2.0 support
GenomeStats.pl  1.35  10 years  parrello  ERDB 2.0 support
Genomes.pl  1.1  10 years  parrello  Tutorial examples.
HyperLink.pm  1.1  10 years  parrello  ERDB 2.0 support
LoadFIGTables.pl  1.2  11 years  parrello  Removed obsolete use clauses.
LoadScript.pl  1.4  11 years  parrello  Removed obsolete use clauses.
LoadSproutTables.pl  1.49  11 years  parrello  Fixed some documentation, set the default trace level to 3.
Makefile  1.22  10 years  parrello  Added javascript support. Removed support for DBD documentation, which is accomp...
MarkupTest.pl  1.3  11 years  parrello  Removed obsolete use clauses.
NeighboringFeatures.pl  1.1  10 years  parrello  Tutorial examples.
NewSproutDBD.xml  1.1  10 years  parrello  Used for special loads.
NewStuffCheck.pl  1.27  10 years  parrello  Improved site maintenance utilities.
NmpdrCheck.pl  1.2  10 years  parrello  Improved site maintenance utilities.
NmpdrFix.pl  1.2  10 years  parrello  Improved site maintenance utilities.
NmpdrPage.pm  1.1  13 years  parrello  Moved NMPDRPage to Sprout directory.
NmpdrSearch.png  1.2  13 years  parrello  Changed to the globe thingy.
NmpdrSearch.src  1.2  13 years  parrello  Fixed a bad URL.
NmpdrSetup.pl  1.2  10 years  parrello  ERDB 2.0 support
NmpdrStatus.pl  1.2  11 years  parrello  Removed obsolete use clauses.
NmpdrSwitch.pl  1.2  11 years  parrello  Removed obsolete use clauses.
PropertySproutLoader.pm  1.2  10 years  parrello  ERDB 2.0 support
RHFeatures.pm  1.11  10 years  parrello  Target search support
RHLigands.pm  1.4  10 years  parrello  Improved search result support.
RHLocations.pm  1.6  10 years  parrello  Improved search result support.
ReactionSproutLoader.pm  1.2  10 years  parrello  ERDB 2.0 support
ResultHelper.pm  1.7  10 years  parrello  Improved search result support.
SHBatchSearch.pm  1.1  10 years  parrello  Improved search result support.
SHDrugSearch.pm  1.12  10 years  parrello  Improved search result support.
SHGeneBbhSearch.pm  1.1  10 years  parrello  Improved search result support.
SHGeneSearch.pm  1.4  10 years  parrello  Improved search result support.
SHOpSearch.pm  1.5  10 years  parrello  Improved search result support.
SHOrgSumSearch.pm  1.1  10 years  parrello  Improved search result support.
SHPropSearch.pm  1.8  10 years  parrello  Improved search result support.
SHSigGenes.pm  1.20  10 years  parrello  Improved search result support.
SHSubSearch.pm  1.10  10 years  parrello  Improved search result support.
SHTargetSearch.js  1.1  10 years  parrello  Target search support
SHTargetSearch.pm  1.1  10 years  parrello  Target search support
SHToolSearch.pm  1.6  10 years  parrello  Improved search result support.
SHWordSearch.pm  1.11  10 years  parrello  Improved search result support.
Sapling.pm  1.2  10 years  parrello  Fixed a bug in InsertObject. Added support for demand-driven flow control.
SaplingConfig.xml  1.1  10 years  parrello  Sapling support.
SaplingDBD.xml  1.6  10 years  parrello  Sapling support.
SearchHelper.pm  1.43  10 years  parrello  Improved search result support.
SearchSkeleton.pm  1.2  10 years  parrello  Improved search result support.
SetGroup.pl  1.2  11 years  parrello  Removed obsolete use clauses.
SetPermissions.pl  1.8  11 years  parrello  Removed obsolete use clauses.
ShowCounts.pl  1.19  10 years  parrello  Improved site maintenance utilities.
SimBlocks.pm  1.11  11 years  parrello  Changed POD format for better compatability with Wiki.
SimBlocksDBD.xml  1.5  13 years  parrello  Replaced field "end" with "endpoint" to fix reserved word problem.
SimLoad.pl  1.12  10 years  parrello  ERDB 2.0 support
SingleTableLoad.pl  1.3  11 years  parrello  Removed obsolete use clauses.
SiteMeter.html  1.1  12 years  parrello  Added to make SiteMeter code more generally available.
SourceSproutLoader.pm  1.2  10 years  parrello  ERDB 2.0 support
SpanishInquisition.pl  1.2  11 years  parrello  Converted to use StandardSetup.
Sprout.pm  1.123  10 years  parrello  Fixed a bug in InsertObject. Added support for demand-driven flow control.
SproutDBD.xml  1.60  10 years  parrello  ERDB 2.0 support
SproutGFF.pl  1.3  11 years  parrello  Removed obsolete use clauses.
SproutLoad.pm  1.97  11 years  parrello  New loader technology.
SproutNotes.htm  1.1.1.1  15 years  parrello  no message
SproutQuery.pm  1.2  13 years  parrello  Fxied obsolete references to the {_erdb} member.
SproutStats.pl  1.2  13 years  parrello  Fxied obsolete references to the {_erdb} member.
SproutSubsys.pm  1.21  10 years  parrello  Changed to support scenarios and to work faster.
StopWords.txt  1.1  11 years  parrello  Changes for v24 database.
SubsystemSaplingLoader.pm  1.1  10 years  parrello  Sapling support.
SubsystemSproutLoader.pm  1.2  10 years  parrello  ERDB 2.0 support
SynonymSproutLoader.pm  1.2  10 years  parrello  ERDB 2.0 support
TagCount.pl  1.5  11 years  parrello  Changes for v24 database.
TargetCriterion.pm  1.1  10 years  parrello  Target search support
TargetCriterionCellLocation.pm  1.1  10 years  parrello  Target search support
TargetCriterionCodeMatch.pm  1.1  10 years  parrello  Target search support
TargetCriterionConservedNeighborhood.pm  1.1  10 years  parrello  Target search support
TargetCriterionEC.pm  1.1  10 years  parrello  Target search support
TargetCriterionExternalId.pm  1.1  10 years  parrello  Target search support
TargetCriterionGeneId.pm  1.1  10 years  parrello  Target search support
TargetCriterionGeneric.pm  1.1  10 years  parrello  Target search support
TargetCriterionKeyword.pm  1.1  10 years  parrello  Target search support
TargetCriterionNull.pm  1.1  10 years  parrello  Target search support
TargetCriterionQuery.pm  1.1  10 years  parrello  Target search support
TargetCriterionRange.pm  1.1  10 years  parrello  Target search support
TargetCriterionSmallTable.pm  1.1  10 years  parrello  Target search support
fig.htaccess  1.1  10 years  parrello  Blank htaccess file for future use.
indexCGI.pl  1.1  11 years  parrello  DirectoryIndex script for NMPDR.
locations.pl  1.2  13 years  parrello  Fixed default trace level.
nmpdr.js  1.1  10 years  parrello  Moved from CSS directory.
robots.txt  1.4  11 years  parrello  Removed some obsolete stuff.
startconsole.bat  1.1  14 years  parrello  Added this script for starting a FIG console on Windows machines.
variation.html  1.1.1.1  15 years  parrello  no message

MCS Webmaster
ViewVC Help
Powered by ViewVC 1.0.3