[Bio] Log of /SeedViewer/seedviewer.cgi

Revision 1.35 - (view) (download) (annotate) - [select for diffs]
Fri Jan 21 20:30:33 2011 UTC (8 years, 10 months ago) by olson
Branch: MAIN
Changes since 1.34: +44 -2 lines
Diff to previous 1.34

Add atomic regulon display support.

Revision 1.34 - (view) (download) (annotate) - [select for diffs]
Thu Dec 23 18:03:19 2010 UTC (8 years, 11 months ago) by olson
Branch: MAIN
CVS Tags: rast_rel_2011_0119
Changes since 1.33: +50 -13 lines
Diff to previous 1.33

Caching / FCGI speedup modifications.

Revision 1.33 - (view) (download) (annotate) - [select for diffs]
Mon Oct 12 14:03:02 2009 UTC (10 years, 1 month ago) by paczian
Branch: MAIN
CVS Tags: rast_rel_2010_0118, rast_rel_2010_0526, rast_rel_2010_0827, rast_rel_2010_0928, rast_rel_2010_1206
Changes since 1.32: +21 -109 lines
Diff to previous 1.32

updated help links

Revision 1.32 - (view) (download) (annotate) - [select for diffs]
Wed Aug 26 20:33:50 2009 UTC (10 years, 3 months ago) by olson
Branch: MAIN
CVS Tags: rast_rel_2009_0925
Changes since 1.31: +106 -18 lines
Diff to previous 1.31

Performance optimizations; flip to 'die cgi_exit' instead of 'exit'.

Revision 1.31 - (view) (download) (annotate) - [select for diffs]
Thu Jul 9 10:03:34 2009 UTC (10 years, 5 months ago) by paczian
Branch: MAIN
CVS Tags: rast_rel_2009_07_09
Changes since 1.30: +0 -1 lines
Diff to previous 1.30

removed requirement for terms of service

Revision 1.30 - (view) (download) (annotate) - [select for diffs]
Wed Jul 8 12:45:31 2009 UTC (10 years, 5 months ago) by paczian
Branch: MAIN
Changes since 1.29: +4 -1 lines
Diff to previous 1.29

changed name of default.css to web_app_default.css to resolve name clash

Revision 1.29 - (view) (download) (annotate) - [select for diffs]
Wed Jul 8 00:02:57 2009 UTC (10 years, 5 months ago) by parrello
Branch: MAIN
Changes since 1.28: +1 -1 lines
Diff to previous 1.28

Reverse previous incorrect fix.

Revision 1.28 - (view) (download) (annotate) - [select for diffs]
Tue Jul 7 23:51:58 2009 UTC (10 years, 5 months ago) by parrello
Branch: MAIN
Changes since 1.27: +1 -1 lines
Diff to previous 1.27

Fixed URL for default.css.

Revision 1.27 - (view) (download) (annotate) - [select for diffs]
Tue Dec 2 16:02:47 2008 UTC (11 years ago) by paczian
Branch: MAIN
CVS Tags: rast_rel_2008_12_18, rast_rel_2009_02_05, rast_rel_2009_03_26, rast_rel_2009_05_18
Changes since 1.26: +1 -0 lines
Diff to previous 1.26

enabled new scenario package

Revision 1.26 - (view) (download) (annotate) - [select for diffs]
Thu Oct 16 22:30:43 2008 UTC (11 years, 1 month ago) by olson
Branch: MAIN
CVS Tags: mgrast_rel_2008_1110, mgrast_rel_2008_1110_v2, rast_rel_2008_10_29, rast_rel_2008_11_24
Changes since 1.25: +2 -1 lines
Diff to previous 1.25

Initial changes to support mod_perl with RAST/SeedViewer:

Template loading requires absolute path. We use TMPL_PATH for this.

add_css used to use TMPL_PATH, but css paths are in URL space, not in
filesystem space. Add new TMPL_URL_PATH to WebConfig and use that instead.

WebApplication::run should not exit; mod_perl doesn't like it and it isn't necessary. Just return.

Revision 1.25 - (view) (download) (annotate) - [select for diffs]
Thu Oct 2 10:27:39 2008 UTC (11 years, 2 months ago) by paczian
Branch: MAIN
CVS Tags: rast_rel_2008_10_09
Changes since 1.24: +9 -1 lines
Diff to previous 1.24

added contact info check. If $server_type is present in FIG_Config.pm, will change contact mail address accordingly.

Revision 1.24 - (view) (download) (annotate) - [select for diffs]
Thu Sep 4 18:58:15 2008 UTC (11 years, 3 months ago) by parrello
Branch: MAIN
CVS Tags: mgrast_rel_2008_0625, mgrast_rel_2008_0917, mgrast_rel_2008_0919, mgrast_rel_2008_0923, mgrast_rel_2008_0924, rast_2008_0924, rast_rel_2008_09_29, rast_rel_2008_09_30, rast_release_2008_09_29
Changes since 1.23: +40 -64 lines
Diff to previous 1.23

Fixed to once again permit seed-mode testing on NMPDR machines. Moved in tracing initialization from WebApplication so that it kicks in immediately instead of at the end of the initialization process.

Revision 1.23 - (view) (download) (annotate) - [select for diffs]
Wed Sep 3 20:42:27 2008 UTC (11 years, 3 months ago) by parrello
Branch: MAIN
Changes since 1.22: +17 -6 lines
Diff to previous 1.22

Fixed to work with the new NMPDR.

Revision 1.22 - (view) (download) (annotate) - [select for diffs]
Mon Jul 28 14:41:22 2008 UTC (11 years, 4 months ago) by paczian
Branch: MAIN
CVS Tags: mgrast_rel_2008_0806, rast_rel_2008_08_07
Changes since 1.21: +1 -4 lines
Diff to previous 1.21

search box moved from Navigate menu to the right of the menu bar

Revision 1.21 - (view) (download) (annotate) - [select for diffs]
Mon Jun 2 05:11:53 2008 UTC (11 years, 6 months ago) by parrello
Branch: MAIN
CVS Tags: rast_rel_2008_06_16, rast_rel_2008_06_18, rast_rel_2008_07_21
Changes since 1.20: +3 -4 lines
Diff to previous 1.20

Removed default.css from NMPDR mode. This fixes several Internet Explorer style problems.

Revision 1.20 - (view) (download) (annotate) - [select for diffs]
Fri May 9 06:20:03 2008 UTC (11 years, 7 months ago) by parrello
Branch: MAIN
Changes since 1.19: +0 -1 lines
Diff to previous 1.19

Tightened up the emergency error code.

Revision 1.19 - (view) (download) (annotate) - [select for diffs]
Thu May 8 14:42:23 2008 UTC (11 years, 7 months ago) by parrello
Branch: MAIN
Changes since 1.18: +3 -1 lines
Diff to previous 1.18

Added some tracing.

Revision 1.18 - (view) (download) (annotate) - [select for diffs]
Wed May 7 23:04:08 2008 UTC (11 years, 7 months ago) by parrello
Branch: MAIN
Changes since 1.17: +5 -6 lines
Diff to previous 1.17

Changed to use "Warn" during error recovery. This will cause Seed Viewer crashes to appear in the RSS error feed.

Revision 1.17 - (view) (download) (annotate) - [select for diffs]
Thu May 1 07:58:38 2008 UTC (11 years, 7 months ago) by parrello
Branch: MAIN
Changes since 1.16: +3 -2 lines
Diff to previous 1.16

Switched to display the NMPDR icon instead of the version when running in Sprout mode.

Revision 1.16 - (view) (download) (annotate) - [select for diffs]
Tue Apr 29 20:39:07 2008 UTC (11 years, 7 months ago) by parrello
Branch: MAIN
Changes since 1.15: +11 -16 lines
Diff to previous 1.15

Fixed menus. Removed sitemeter and tracing support (now handled in framework). Traced errors so we see them in the log.

Revision 1.15 - (view) (download) (annotate) - [select for diffs]
Sun Mar 23 16:04:27 2008 UTC (11 years, 8 months ago) by parrello
Branch: MAIN
CVS Tags: rast_rel_2008_04_23
Changes since 1.14: +14 -9 lines
Diff to previous 1.14

Shifted around some styles to get the correct override order. Customized some of the menus for NMPDR mode.

Revision 1.14 - (view) (download) (annotate) - [select for diffs]
Fri Mar 14 17:59:48 2008 UTC (11 years, 8 months ago) by paczian
Branch: MAIN
Changes since 1.13: +1 -1 lines
Diff to previous 1.13

put id box style into stylesheet

Revision 1.13 - (view) (download) (annotate) - [select for diffs]
Mon Feb 18 21:38:15 2008 UTC (11 years, 9 months ago) by paczian
Branch: MAIN
Changes since 1.12: +1 -0 lines
Diff to previous 1.12

update menu with entry for FigFams

Revision 1.12 - (view) (download) (annotate) - [select for diffs]
Tue Feb 5 04:44:46 2008 UTC (11 years, 10 months ago) by parrello
Branch: MAIN
Changes since 1.11: +0 -1 lines
Diff to previous 1.11

Removed an invalid comment.

Revision 1.11 - (view) (download) (annotate) - [select for diffs]
Wed Jan 23 21:08:12 2008 UTC (11 years, 10 months ago) by paczian
Branch: MAIN
Changes since 1.10: +1 -1 lines
Diff to previous 1.10

commented out Admin category from the menu. All functionality this used to have should now be included in the AccountManagement page.

Revision 1.10 - (view) (download) (annotate) - [select for diffs]
Thu Jan 17 21:41:50 2008 UTC (11 years, 10 months ago) by paczian
Branch: MAIN
Changes since 1.9: +4 -3 lines
Diff to previous 1.9

added link to 'I forgot my password' to the help menu

Revision 1.9 - (view) (download) (annotate) - [select for diffs]
Thu Dec 13 17:34:27 2007 UTC (11 years, 11 months ago) by paczian
Branch: MAIN
Changes since 1.8: +6 -5 lines
Diff to previous 1.8

moved sitemeter in here

Revision 1.8 - (view) (download) (annotate) - [select for diffs]
Thu Dec 13 16:06:17 2007 UTC (11 years, 11 months ago) by paczian
Branch: MAIN
Changes since 1.7: +5 -0 lines
Diff to previous 1.7

added site-meter option, requires FIG_Config::site_meter to be 1

Revision 1.7 - (view) (download) (annotate) - [select for diffs]
Thu Dec 6 21:17:47 2007 UTC (12 years ago) by paczian
Branch: MAIN
Changes since 1.6: +8 -9 lines
Diff to previous 1.6

added no warnings 'once' to avoid error log spam

Revision 1.6 - (view) (download) (annotate) - [select for diffs]
Thu Nov 29 16:31:17 2007 UTC (12 years ago) by parrello
Branch: MAIN
Changes since 1.5: +41 -14 lines
Diff to previous 1.5

Updated to work in NMPDR with different styles.

Revision 1.5 - (view) (download) (annotate) - [select for diffs]
Mon Nov 26 17:29:08 2007 UTC (12 years ago) by paczian
Branch: MAIN
Changes since 1.4: +15 -5 lines
Diff to previous 1.4

moved dbmaster creation to WebApplication.pm

Revision 1.4 - (view) (download) (annotate) - [select for diffs]
Wed Nov 7 17:09:12 2007 UTC (12 years, 1 month ago) by paczian
Branch: MAIN
Changes since 1.3: +7 -6 lines
Diff to previous 1.3

now uses default.css by default (duh!)

Revision 1.3 - (view) (download) (annotate) - [select for diffs]
Mon Oct 8 19:32:45 2007 UTC (12 years, 2 months ago) by paczian
Branch: MAIN
Changes since 1.2: +3 -12 lines
Diff to previous 1.2

fixed things

Revision 1.2 - (view) (download) (annotate) - [select for diffs]
Mon Jul 16 16:07:05 2007 UTC (12 years, 4 months ago) by paczian
Branch: MAIN
Changes since 1.1: +21 -13 lines
Diff to previous 1.1

some updates, forgot what

Revision 1.1 - (view) (download) (annotate) - [select for diffs]
Thu Jun 7 15:05:39 2007 UTC (12 years, 6 months ago) by paczian
Branch: MAIN

changed name from index.cgi to avoid naming conflicts

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