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Revision 1.18 - (download) (annotate)
Wed May 7 23:04:08 2008 UTC (11 years, 7 months ago) by parrello
Branch: MAIN
Changes since 1.17: +5 -6 lines
Changed to use "Warn" during error recovery. This will cause Seed Viewer crashes to appear in the RSS error feed.

use strict;
use warnings;
no warnings 'once';

use DBMaster;
use WebApplication;
use WebMenu;
use WebLayout;
use Tracer;
use FIGRules;
use FIG_Config;

eval {
    &main;
};

if ($@)
{
    my $error = $@;
    Warn("Script error: $error") if T(SeedViewer => 0);

    print CGI::header();
    print CGI::start_html();
    
    # print out the error
    print '<pre>'.$error.'</pre>';

    print CGI::end_html();

}

sub main {

    # initialize cgi
    my $cgi = new CGI();

    # initialize layout
    # Use the template file for the current mode-- NMPDR or SEED
    my $templateFile = (FIGRules::nmpdr_mode($cgi) ? './Html/NmpdrViewer.tmpl' : './Html/SeedViewer.tmpl');
    Trace("Template file is $templateFile") if T(3);
    my $layout = WebLayout->new($templateFile);
    # Choose the body/header style sheet according to the mode.   
    if (FIGRules::nmpdr_mode($cgi)) {
        # NMPDR mode.
        $layout->add_css('./Html/nmpdrviewer.css');
        # Display the official NMPDR icon for this machine.
        $layout->add_metatag("<link rel=\"icon\" href=\"${FIG_Config::cgi_base}wiki/pub/logos/nmpdr.ico\" type=\"image/x-icon\" />");
        $layout->add_metatag("<link rel=\"shortcut icon\" href=\"${FIG_Config::cgi_base}wiki/pub/logos/nmpdr.ico\" type=\"image/x-icon\" />");
    } else {
        # SEED mode.
        $layout->add_css('./Html/seedviewer.css');
   }
    # Add the common styles.
    $layout->add_css('./Html/commonviewer.css');
    # Add the normal style.
    $layout->add_css('./Html/default.css');
    # build menu
    my $menu;
    $menu = WebMenu->new();
    if (FIGRules::nmpdr_mode($cgi)) {
        $menu->add_category('&raquo;Navigate', '?page=Home');
    	$menu->add_entry('&raquo;Navigate', 'NMPDR home', "$FIG_Config::nmpdr_site_url/index.php");
    	$menu->add_entry('&raquo;Navigate', 'Organisms', "$FIG_Config::nmpdr_site_url/content/organisms.php");
    	$menu->add_entry('&raquo;Navigate', 'Subsystems', "$FIG_Config::nmpdr_site_url/content/subsystems.php");
    	$menu->add_entry('&raquo;Navigate', 'FigFams', '?page=FigFamViewer');
    } else {
	$menu->add_category('&raquo;Navigate', '?page=Home');
	$menu->add_entry('&raquo;Navigate', 'Startpage', '?page=Home');
	$menu->add_entry('&raquo;Navigate', 'Organisms', '?page=OrganismSelect');
	$menu->add_entry('&raquo;Navigate', 'Subsystems', '?page=SubsystemSelect');
	$menu->add_entry('&raquo;Navigate', 'FigFams', '?page=FigFamViewer');
	$menu->add_entry('&raquo;Navigate', '<a>Jump to Feature by</a>');
	$menu->add_entry('&raquo;Navigate', '&nbsp;&nbsp;BLAST Search', '?page=BlastRun');
	$menu->add_entry('&raquo;Navigate', "<form style='margin: 0px 0px 0px 6px;'>&nbsp;&nbsp;ID&nbsp;&nbsp;<input type='text' name='pattern' style='border: 1px solid #5da668; width: 100px; height: 17px; margin-top: 2px; font-size: 11px;'><input type='hidden' name='page' value='SearchResult'><input type='hidden' name='action' value='check_search'><input type='submit' style='display:none;'></form>");
    }
    if (defined($FIG_Config::teacher_db)) {
        $menu->add_category('&raquo;Teacher', '?page=Teach', undef, ['edit', 'problem_list'], 96);
        $menu->add_entry('&raquo;Teacher', 'Class Performance', '?page=Teach');
        $menu->add_entry('&raquo;Teacher', 'Class Management', '?page=ManageClass');
        $menu->add_entry('&raquo;Teacher', 'Problem Sets', '?page=ManageProblemSets');
	$menu->add_entry('&raquo;Teacher', 'Annotation Resolve', '?page=ClassAnnotationResolve');
    }
    #$menu->add_category('&raquo;Admin', '?page=Admin', undef, ['edit', 'scope', '*'], 99);
    if (FIGRules::nmpdr_mode($cgi)) {
        $menu->add_category('Help', "$FIG_Config::nmpdr_site_url/content/help.php", 'help', undef, 98);
        $menu->add_entry('Help', 'Searching NMPDR', "$FIG_Config::nmpdr_site_url/content/find.php");
        $menu->add_entry('Help', 'Contact', "$FIG_Config::nmpdr_site_url/content/contactus.php");
    } else {
        $menu->add_category('&raquo;Help', 'http://www.theseed.org', 'help', undef, 98);
        $menu->add_entry('&raquo;Help', 'What is the SEED', 'http://www.theseed.org/wiki/Home_of_the_SEED');
        $menu->add_entry('&raquo;Help', 'HowTo use the SEED Viewer', 'http://www.theseed.org/wiki/SEED_Viewer_Tutorial');
        $menu->add_entry('&raquo;Help', 'Submitting Data to SEED', 'http://www.theseed.org/wiki/RAST_Tutorial');
        $menu->add_entry('&raquo;Help', 'Contact', 'http://www.theseed.org/wiki/Contact');
        $menu->add_entry('&raquo;Help', 'Register', '?page=Register');
	$menu->add_entry('&raquo;Help', 'I forgot my Password', '?page=RequestNewPassword');
    }
    # initialize application
    my $WebApp = WebApplication->new( { id => 'SeedViewer',
					menu     => $menu,
					layout   => $layout,
					default  => 'Home',
				      } );
    $WebApp->page_title_prefix('SEED Viewer - ');
    $WebApp->show_login_user_info(1);

    # run application
    $WebApp->run();

}

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