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revision 1.4, Wed Nov 7 17:09:12 2007 UTC revision 1.25, Thu Oct 2 10:27:39 2008 UTC
# Line 1  Line 1 
1  use strict;  use strict;
2  use warnings;  use warnings;
3    no warnings 'once';
4    
5  use DBMaster;  use DBMaster;
6  use WebApplication;  use WebApplication;
7  use WebMenu;  use WebMenu;
8  use WebLayout;  use WebLayout;
9    use Tracer;
10    use FIGRules;
11    use FIG_Config;
12    
13  eval {  eval {
14      &main;      &main;
# Line 12  Line 16 
16    
17  if ($@)  if ($@)
18  {  {
19      my $cgi = new CGI();      my $error = $@;
20        Warn("Script error: $error") if T(SeedViewer => 0);
21    
22      print $cgi->header();      print CGI::header();
23      print $cgi->start_html();      print CGI::start_html();
24    
25      # print out the error      # print out the error
26      print '<pre>'.$@.'</pre>';      print '<pre>'.$error.'</pre>';
27    
28      print $cgi->end_html();      print CGI::end_html();
29    
30  }  }
31    
# Line 28  Line 33 
33    
34      # initialize cgi      # initialize cgi
35      my $cgi = new CGI();      my $cgi = new CGI();
36        # Initialize tracing.
37      # initialize db-master      ETracing($cgi);
38      my $dbmaster = DBMaster->new(-database => 'WebAppBackend');      if (FIGRules::nmpdr_mode($cgi)) {
39            Trace("NMPDR mode selected.") if T(3);
40            my $parms = $cgi->query_string();
41            if ($parms) {
42                $parms = "?$parms";
43            } else {
44                $parms = "?page=Home";
45            }
46            print CGI::redirect(-uri => "$FIG_Config::cgi_url/wiki/rest.cgi/NmpdrPlugin/SeedViewer$parms",
47                                -status => 301);
48        } else {
49      # initialize layout      # initialize layout
50      my $layout = WebLayout->new('./Html/SeedViewer.tmpl');          # Use the template file for the current mode-- NMPDR or SEED
51      $layout->add_css('./Html/default.css');          my $templateFile = "./Html/SeedViewer.tmpl";
52      $layout->add_css('./Html/seedviewer.css');          Trace("Template file is $templateFile") if T(3);
53            my $layout = WebLayout->new($templateFile);
54            # Choose the body/header style sheet according to the mode.
55            $layout->add_css("$FIG_Config::cgi_url/Html/seedviewer.css");
56            $layout->add_css("$FIG_Config::cgi_url/Html/commonviewer.css");
57            $layout->add_css("$FIG_Config::cgi_url/Html/default.css");
58      # build menu      # build menu
59      my $menu = WebMenu->new();          my $menu;
60            $menu = WebMenu->new();
61      $menu->add_category('&raquo;Navigate', '?page=Home');      $menu->add_category('&raquo;Navigate', '?page=Home');
62      $menu->add_entry('&raquo;Navigate', 'Search', '?page=Home');          $menu->add_entry('&raquo;Navigate', 'Startpage', '?page=Home');
     $menu->add_entry('&raquo;Navigate', 'Subsystems', '?page=SubsystemSelect');  
63      $menu->add_entry('&raquo;Navigate', 'Organisms', '?page=OrganismSelect');      $menu->add_entry('&raquo;Navigate', 'Organisms', '?page=OrganismSelect');
64            $menu->add_entry('&raquo;Navigate', 'Subsystems', '?page=SubsystemSelect');
65            $menu->add_entry('&raquo;Navigate', 'FigFams', '?page=FigFamViewer');
66            $menu->add_entry('&raquo;Navigate', 'BLAST Search', '?page=BlastRun');
67            if (defined($FIG_Config::teacher_db)) {
68      $menu->add_category('&raquo;Teacher', '?page=Teach', undef, ['edit', 'problem_list'], 96);      $menu->add_category('&raquo;Teacher', '?page=Teach', undef, ['edit', 'problem_list'], 96);
69      $menu->add_category('&raquo;Admin', '?page=Admin', undef, ['edit', 'scope', '*'], 99);              $menu->add_entry('&raquo;Teacher', 'Class Performance', '?page=Teach');
70                $menu->add_entry('&raquo;Teacher', 'Class Management', '?page=ManageClass');
71                $menu->add_entry('&raquo;Teacher', 'Problem Sets', '?page=ManageProblemSets');
72                $menu->add_entry('&raquo;Teacher', 'Annotation Resolve', '?page=ClassAnnotationResolve');
73            }
74      $menu->add_category('&raquo;Help', 'http://www.theseed.org', 'help', undef, 98);      $menu->add_category('&raquo;Help', 'http://www.theseed.org', 'help', undef, 98);
75      $menu->add_entry('&raquo;Help', 'What is the SEED', 'http://www.theseed.org/wiki/Home_of_the_SEED');      $menu->add_entry('&raquo;Help', 'What is the SEED', 'http://www.theseed.org/wiki/Home_of_the_SEED');
76      $menu->add_entry('&raquo;Help', 'HowTo use the SEED Viewer', 'http://www.theseed.org/wiki/SEED_Viewer_Tutorial');      $menu->add_entry('&raquo;Help', 'HowTo use the SEED Viewer', 'http://www.theseed.org/wiki/SEED_Viewer_Tutorial');
77      $menu->add_entry('&raquo;Help', 'Submitting Data to SEED', 'http://www.theseed.org/wiki/RAST_Tutorial');      $menu->add_entry('&raquo;Help', 'Submitting Data to SEED', 'http://www.theseed.org/wiki/RAST_Tutorial');
     $menu->add_entry('&raquo;Help', 'Contact', 'http://www.theseed.org/wiki/Contact');  
     $menu->add_entry('&raquo;Help', 'Register', '?page=Register');  
78    
79            # check which contact info to show
80            if (defined($FIG_Config::server_type) && ($FIG_Config::server_type eq 'MG-RAST')) {
81                $menu->add_entry('&raquo;Help', 'Contact', 'mailto:mg-rast@mcs.anl.gov', undef, ['login']);
82            } elsif (defined($FIG_Config::server_type) && ($FIG_Config::server_type eq 'RAST')) {
83                $menu->add_entry('&raquo;Help', 'Contact', 'mailto:rast@mcs.anl.gov', undef, ['login']);
84            } else {
85                $menu->add_entry('&raquo;Help', 'Contact', 'mailto:info@theseed.org');
86            }
87            $menu->add_entry('&raquo;Help', 'Register', '?page=Register');
88            $menu->add_entry('&raquo;Help', 'I forgot my Password', '?page=RequestNewPassword');
89      # initialize application      # initialize application
90      my $WebApp = WebApplication->new( { id => 'SeedViewer',      my $WebApp = WebApplication->new( { id => 'SeedViewer',
                                         dbmaster => $dbmaster,  
91                                          menu     => $menu,                                          menu     => $menu,
92                                          layout   => $layout,                                          layout   => $layout,
93                                          default  => 'Home',                                          default  => 'Home',
94                                        } );                                        } );
95            my $prefix = "Seed Viewer - ";
96            $WebApp->page_title_prefix($prefix);
97            $WebApp->show_login_user_info(1);
98      # run application      # run application
99      $WebApp->run();      $WebApp->run();
100        }
101  }  }

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