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revision 1.12, Tue Feb 5 04:44:46 2008 UTC revision 1.29, Wed Jul 8 00:02:57 2009 UTC
# Line 9  Line 9 
9  use Tracer;  use Tracer;
10  use FIGRules;  use FIGRules;
11  use FIG_Config;  use FIG_Config;
12    use WebConfig;
13    
14  eval {  eval {
15      &main;      &main;
# Line 16  Line 17 
17    
18  if ($@)  if ($@)
19  {  {
20      my $cgi = new CGI();      my $error = $@;
21        Warn("Script error: $error") if T(SeedViewer => 0);
22    
23      print $cgi->header();      print CGI::header();
24      print $cgi->start_html();      print CGI::start_html();
25    
26      # print out the error      # print out the error
27      print '<pre>'.$@.'</pre>';      print '<pre>'.$error.'</pre>';
28    
29      print $cgi->end_html();      print CGI::end_html();
30    
31  }  }
32    
# Line 32  Line 34 
34    
35      # initialize cgi      # initialize cgi
36      my $cgi = new CGI();      my $cgi = new CGI();
37        # Initialize tracing.
38      ETracing($cgi);      ETracing($cgi);
39        if (FIGRules::nmpdr_mode($cgi)) {
40            Trace("NMPDR mode selected.") if T(3);
41            my $parms = $cgi->query_string();
42            if ($parms) {
43                $parms = "?$parms";
44            } else {
45                $parms = "?page=Home";
46            }
47            print CGI::redirect(-uri => "$FIG_Config::cgi_url/wiki/rest.cgi/NmpdrPlugin/SeedViewer$parms",
48                                -status => 301);
49        } else {
50      # initialize layout      # initialize layout
51      # Use the template file for the current mode-- NMPDR or SEED      # Use the template file for the current mode-- NMPDR or SEED
52      my $templateFile = (FIGRules::nmpdr_mode($cgi) ? './Html/NmpdrViewer.tmpl' : './Html/SeedViewer.tmpl');          my $templateFile = TMPL_PATH . "/SeedViewer.tmpl";
53      Trace("Template file is $templateFile") if T(3);      Trace("Template file is $templateFile") if T(3);
54      my $layout = WebLayout->new($templateFile);      my $layout = WebLayout->new($templateFile);
     # Start with the normal style.  
     $layout->add_css('./Html/default.css');  
55      # Choose the body/header style sheet according to the mode.      # Choose the body/header style sheet according to the mode.
56      if (FIGRules::nmpdr_mode($cgi)) {          $layout->add_css("$FIG_Config::cgi_url/Html/seedviewer.css");
57          # NMPDR mode.          $layout->add_css("$FIG_Config::cgi_url/Html/commonviewer.css");
58          $layout->add_css('./Html/nmpdrviewer.css');          $layout->add_css("$FIG_Config::cgi_url/Html/default.css");
         # Show the NMPDR version in the header.  
         $layout->set_variable(VERSION => "Sprout version $FIG_Config::nmpdr_version on $ENV{HTTP_HOST}.");  
     } else {  
         # SEED mode.  
         $layout->add_css('./Html/seedviewer.css');  
    }  
     # Add the common styles.  
     $layout->add_css('./Html/commonviewer.css');  
   
     # add site meter  
     my $site_meter = $FIG_Config::site_meter;  
     if ($site_meter) {  
         $layout->add_javascript("http://s20.sitemeter.com/js/counter.js?site=s20nmpdr");  
     }  
   
59      # build menu      # build menu
60      my $menu;      my $menu;
61      $menu = WebMenu->new();      $menu = WebMenu->new();
# Line 67  Line 63 
63      $menu->add_entry('&raquo;Navigate', 'Startpage', '?page=Home');      $menu->add_entry('&raquo;Navigate', 'Startpage', '?page=Home');
64      $menu->add_entry('&raquo;Navigate', 'Organisms', '?page=OrganismSelect');      $menu->add_entry('&raquo;Navigate', 'Organisms', '?page=OrganismSelect');
65      $menu->add_entry('&raquo;Navigate', 'Subsystems', '?page=SubsystemSelect');      $menu->add_entry('&raquo;Navigate', 'Subsystems', '?page=SubsystemSelect');
66      $menu->add_entry('&raquo;Navigate', '<a>Jump to Feature by</a>');          $menu->add_entry('&raquo;Navigate', 'Scenarios', '?page=Scenarios');
67      $menu->add_entry('&raquo;Navigate', '&nbsp;&nbsp;BLAST Search', '?page=BlastRun');          $menu->add_entry('&raquo;Navigate', 'FigFams', '?page=FigFamViewer');
68      $menu->add_entry('&raquo;Navigate', "<form style='margin: 0px 0px 0px 6px;'>&nbsp;&nbsp;ID&nbsp;&nbsp;<input type='text' name='pattern' style='border: 1px solid #5da668; width: 100px; height: 17px; margin-top: 2px; font-size: 11px;'><input type='hidden' name='page' value='SearchResult'><input type='hidden' name='action' value='check_search'><input type='submit' style='display:none;'></form>");          $menu->add_entry('&raquo;Navigate', 'BLAST Search', '?page=BlastRun');
   
69      if (defined($FIG_Config::teacher_db)) {      if (defined($FIG_Config::teacher_db)) {
70          $menu->add_category('&raquo;Teacher', '?page=Teach', undef, ['edit', 'problem_list'], 96);          $menu->add_category('&raquo;Teacher', '?page=Teach', undef, ['edit', 'problem_list'], 96);
71          $menu->add_entry('&raquo;Teacher', 'Class Performance', '?page=Teach');          $menu->add_entry('&raquo;Teacher', 'Class Performance', '?page=Teach');
# Line 78  Line 73 
73          $menu->add_entry('&raquo;Teacher', 'Problem Sets', '?page=ManageProblemSets');          $menu->add_entry('&raquo;Teacher', 'Problem Sets', '?page=ManageProblemSets');
74          $menu->add_entry('&raquo;Teacher', 'Annotation Resolve', '?page=ClassAnnotationResolve');          $menu->add_entry('&raquo;Teacher', 'Annotation Resolve', '?page=ClassAnnotationResolve');
75      }      }
     #$menu->add_category('&raquo;Admin', '?page=Admin', undef, ['edit', 'scope', '*'], 99);  
     if (FIGRules::nmpdr_mode($cgi)) {  
         $menu->add_category('&raquo;Help', "$FIG_Config::nmpdr_site_url/content/help.php", 'help', undef, 98);  
         $menu->add_entry('&raquo;Help', 'Searching NMPDR', "$FIG_Config::nmpdr_site_url/content/find.php");  
         $menu->add_entry('&raquo;Help', 'SEED Viewer Tutorial', 'http://www.theseed.org/wiki/SEED_Viewer_Tutorial');  
         $menu->add_entry('&raquo;Help', 'Contact', "$FIG_Config::nmpdr_site_url/content/contact.php");  
     } else {  
76          $menu->add_category('&raquo;Help', 'http://www.theseed.org', 'help', undef, 98);          $menu->add_category('&raquo;Help', 'http://www.theseed.org', 'help', undef, 98);
77          $menu->add_entry('&raquo;Help', 'What is the SEED', 'http://www.theseed.org/wiki/Home_of_the_SEED');          $menu->add_entry('&raquo;Help', 'What is the SEED', 'http://www.theseed.org/wiki/Home_of_the_SEED');
78          $menu->add_entry('&raquo;Help', 'HowTo use the SEED Viewer', 'http://www.theseed.org/wiki/SEED_Viewer_Tutorial');          $menu->add_entry('&raquo;Help', 'HowTo use the SEED Viewer', 'http://www.theseed.org/wiki/SEED_Viewer_Tutorial');
79          $menu->add_entry('&raquo;Help', 'Submitting Data to SEED', 'http://www.theseed.org/wiki/RAST_Tutorial');          $menu->add_entry('&raquo;Help', 'Submitting Data to SEED', 'http://www.theseed.org/wiki/RAST_Tutorial');
80          $menu->add_entry('&raquo;Help', 'Contact', 'http://www.theseed.org/wiki/Contact');  
81            # check which contact info to show
82            if (defined($FIG_Config::server_type) && ($FIG_Config::server_type eq 'MG-RAST')) {
83                $menu->add_entry('&raquo;Help', 'Contact', 'mailto:mg-rast@mcs.anl.gov', undef, ['login']);
84            } elsif (defined($FIG_Config::server_type) && ($FIG_Config::server_type eq 'RAST')) {
85                $menu->add_entry('&raquo;Help', 'Contact', 'mailto:rast@mcs.anl.gov', undef, ['login']);
86            } else {
87                $menu->add_entry('&raquo;Help', 'Contact', 'mailto:info@theseed.org');
88            }
89          $menu->add_entry('&raquo;Help', 'Register', '?page=Register');          $menu->add_entry('&raquo;Help', 'Register', '?page=Register');
90          $menu->add_entry('&raquo;Help', 'I forgot my Password', '?page=RequestNewPassword');          $menu->add_entry('&raquo;Help', 'I forgot my Password', '?page=RequestNewPassword');
     }  
91      # initialize application      # initialize application
92      my $WebApp = WebApplication->new( { id => 'SeedViewer',      my $WebApp = WebApplication->new( { id => 'SeedViewer',
93                                          menu     => $menu,                                          menu     => $menu,
94                                          layout   => $layout,                                          layout   => $layout,
95                                          default  => 'Home',                                          default  => 'Home',
96                                        } );                                        } );
97      $WebApp->page_title_prefix('SEED Viewer - ');          my $prefix = "Seed Viewer - ";
98            $WebApp->page_title_prefix($prefix);
99      $WebApp->show_login_user_info(1);      $WebApp->show_login_user_info(1);
   
100      # run application      # run application
101      $WebApp->run();      $WebApp->run();
102        }
103  }  }

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