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Annotation of /SeedViewer/seedviewer.cgi

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Revision 1.10 - (view) (download)

1 : paczian 1.1 use strict;
2 :     use warnings;
3 : paczian 1.7 no warnings 'once';
4 : paczian 1.1
5 :     use DBMaster;
6 :     use WebApplication;
7 :     use WebMenu;
8 :     use WebLayout;
9 : parrello 1.6 use Tracer;
10 :     use FIGRules;
11 : paczian 1.5 use FIG_Config;
12 : paczian 1.1
13 :     eval {
14 :     &main;
15 :     };
16 :    
17 :     if ($@)
18 :     {
19 :     my $cgi = new CGI();
20 :    
21 :     print $cgi->header();
22 :     print $cgi->start_html();
23 :    
24 :     # print out the error
25 :     print '<pre>'.$@.'</pre>';
26 :    
27 :     print $cgi->end_html();
28 :    
29 :     }
30 :    
31 :     sub main {
32 :    
33 :     # initialize cgi
34 :     my $cgi = new CGI();
35 : parrello 1.6 ETracing($cgi);
36 : paczian 1.1
37 :     # initialize layout
38 : parrello 1.6 # Use the template file for the current mode-- NMPDR or SEED
39 : paczian 1.7 my $templateFile = (FIGRules::nmpdr_mode($cgi) ? './Html/NmpdrViewer.tmpl' : './Html/SeedViewer.tmpl');
40 : parrello 1.6 Trace("Template file is $templateFile") if T(3);
41 :     my $layout = WebLayout->new($templateFile);
42 :     # Start with the normal style.
43 : paczian 1.4 $layout->add_css('./Html/default.css');
44 : parrello 1.6 # Choose the body/header style sheet according to the mode.
45 :     if (FIGRules::nmpdr_mode($cgi)) {
46 :     # NMPDR mode.
47 :     $layout->add_css('./Html/nmpdrviewer.css');
48 :     # Show the NMPDR version in the header.
49 :     $layout->set_variable(VERSION => "Sprout version $FIG_Config::nmpdr_version on $ENV{HTTP_HOST}.");
50 :     } else {
51 :     # SEED mode.
52 :     $layout->add_css('./Html/seedviewer.css');
53 : paczian 1.7 }
54 : parrello 1.6 # Add the common styles.
55 :     $layout->add_css('./Html/commonviewer.css');
56 : paczian 1.1
57 : paczian 1.9 # add site meter
58 :     my $site_meter = $FIG_Config::site_meter;
59 :     if ($site_meter) {
60 :     $layout->add_javascript("http://s20.sitemeter.com/js/counter.js?site=s20nmpdr");
61 :     }
62 :    
63 : paczian 1.1 # build menu
64 : parrello 1.6 my $menu;
65 :     # For now, NMPDR does not use the menu.
66 :     $menu = WebMenu->new();
67 : paczian 1.2 $menu->add_category('&raquo;Navigate', '?page=Home');
68 : paczian 1.5 $menu->add_entry('&raquo;Navigate', 'Startpage', '?page=Home');
69 :     $menu->add_entry('&raquo;Navigate', 'Organisms', '?page=OrganismSelect');
70 : paczian 1.3 $menu->add_entry('&raquo;Navigate', 'Subsystems', '?page=SubsystemSelect');
71 : paczian 1.10 $menu->add_entry('&raquo;Navigate', '<a>Jump to Feature by</a>');
72 :     $menu->add_entry('&raquo;Navigate', '&nbsp;&nbsp;BLAST Search', '?page=BlastRun');
73 :     $menu->add_entry('&raquo;Navigate', "<form style='margin: 0px 0px 0px 6px;'>&nbsp;&nbsp;ID&nbsp;&nbsp;<input type='text' name='pattern' style='border: 1px solid #5da668; width: 100px; height: 17px; margin-top: 2px; font-size: 11px;'><input type='hidden' name='page' value='SearchResult'><input type='hidden' name='action' value='check_search'><input type='submit' style='display:none;'></form>");
74 : paczian 1.5
75 :     if (defined($FIG_Config::teacher_db)) {
76 : parrello 1.6 $menu->add_category('&raquo;Teacher', '?page=Teach', undef, ['edit', 'problem_list'], 96);
77 :     $menu->add_entry('&raquo;Teacher', 'Class Performance', '?page=Teach');
78 :     $menu->add_entry('&raquo;Teacher', 'Class Management', '?page=ManageClass');
79 :     $menu->add_entry('&raquo;Teacher', 'Problem Sets', '?page=ManageProblemSets');
80 : paczian 1.7 $menu->add_entry('&raquo;Teacher', 'Annotation Resolve', '?page=ClassAnnotationResolve');
81 : paczian 1.5 }
82 : paczian 1.4 $menu->add_category('&raquo;Admin', '?page=Admin', undef, ['edit', 'scope', '*'], 99);
83 : parrello 1.6 if (FIGRules::nmpdr_mode($cgi)) {
84 :     $menu->add_category('&raquo;Help', "$FIG_Config::nmpdr_site_url/content/help.php", 'help', undef, 98);
85 :     $menu->add_entry('&raquo;Help', 'Searching NMPDR', "$FIG_Config::nmpdr_site_url/content/find.php");
86 :     $menu->add_entry('&raquo;Help', 'SEED Viewer Tutorial', 'http://www.theseed.org/wiki/SEED_Viewer_Tutorial');
87 :     $menu->add_entry('&raquo;Help', 'Contact', "$FIG_Config::nmpdr_site_url/content/contact.php");
88 :     } else {
89 :     $menu->add_category('&raquo;Help', 'http://www.theseed.org', 'help', undef, 98);
90 :     $menu->add_entry('&raquo;Help', 'What is the SEED', 'http://www.theseed.org/wiki/Home_of_the_SEED');
91 :     $menu->add_entry('&raquo;Help', 'HowTo use the SEED Viewer', 'http://www.theseed.org/wiki/SEED_Viewer_Tutorial');
92 :     $menu->add_entry('&raquo;Help', 'Submitting Data to SEED', 'http://www.theseed.org/wiki/RAST_Tutorial');
93 :     $menu->add_entry('&raquo;Help', 'Contact', 'http://www.theseed.org/wiki/Contact');
94 :     $menu->add_entry('&raquo;Help', 'Register', '?page=Register');
95 : paczian 1.10 $menu->add_entry('&raquo;Help', 'I forgot my Password', '?page=RequestNewPassword');
96 : parrello 1.6 }
97 : paczian 1.1 # initialize application
98 :     my $WebApp = WebApplication->new( { id => 'SeedViewer',
99 :     menu => $menu,
100 :     layout => $layout,
101 :     default => 'Home',
102 :     } );
103 : paczian 1.7 $WebApp->page_title_prefix('SEED Viewer - ');
104 : paczian 1.5 $WebApp->show_login_user_info(1);
105 : paczian 1.1
106 :     # run application
107 :     $WebApp->run();
108 :    
109 :     }

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