[Bio] / SeedViewer / SeedViewer.pm Repository:
ViewVC logotype

Log of /SeedViewer/SeedViewer.pm

Parent Directory Parent Directory


Links to HEAD: (view) (download) (as text) (annotate)
Links to mgrast_release_3_1_2: (view) (download) (as text) (annotate)
Sticky Tag:

Revision 1.35 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Jun 30 19:15:21 2011 UTC (8 years, 4 months ago) by olson
Branch: MAIN
CVS Tags: mgrast_dev_08022011, mgrast_dev_08112011, mgrast_dev_10262011, mgrast_dev_12152011, mgrast_release_3_1_1, mgrast_release_3_1_2, mgrast_version_3_2, rast_rel_2011_0928
Changes since 1.34: +36 -1 lines
Diff to previous 1.34
fixes for open-gates annotation.

Revision 1.34 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Jun 29 14:27:24 2009 UTC (10 years, 4 months ago) by paczian
Branch: MAIN
CVS Tags: mgrast_dev_02212011, mgrast_dev_02222011, mgrast_dev_03252011, mgrast_dev_03312011, mgrast_dev_04012011, mgrast_dev_04052011, mgrast_dev_04082011, mgrast_dev_04132011, mgrast_dev_05262011, mgrast_dev_06072011, mgrast_release_3_0, mgrast_release_3_0_1, mgrast_release_3_0_2, mgrast_release_3_0_3, mgrast_release_3_0_4, mgrast_release_3_1_0, myrast_33, rast_rel_2009_07_09, rast_rel_2009_0925, rast_rel_2010_0118, rast_rel_2010_0526, rast_rel_2010_0827, rast_rel_2010_0928, rast_rel_2010_1206, rast_rel_2011_0119
Changes since 1.33: +1 -1 lines
Diff to previous 1.33
added function for annotators to directly add pubmed link to a feature

Revision 1.33 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Jun 29 13:18:11 2009 UTC (10 years, 4 months ago) by bartels
Branch: MAIN
Changes since 1.32: +58 -1 lines
Diff to previous 1.32
added a function for pmids

Revision 1.32 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Jan 12 05:47:48 2009 UTC (10 years, 10 months ago) by chenry
Branch: MAIN
CVS Tags: rast_rel_2009_02_05, rast_rel_2009_03_26, rast_rel_2009_05_18
Changes since 1.31: +1 -1 lines
Diff to previous 1.31
chenry accidentally checked in version 1.31 of seed viewer. This is to roll back to the original version 1.30.

Revision 1.31 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Jan 12 05:40:35 2009 UTC (10 years, 10 months ago) by chenry
Branch: MAIN
Changes since 1.30: +1 -1 lines
Diff to previous 1.30
*** empty log message ***

Revision 1.30 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Aug 18 20:43:57 2008 UTC (11 years, 3 months ago) by jared
Branch: MAIN
CVS Tags: mgrast_rel_2008_0625, mgrast_rel_2008_0806, mgrast_rel_2008_0917, mgrast_rel_2008_0919, mgrast_rel_2008_0923, mgrast_rel_2008_0924, mgrast_rel_2008_1110, mgrast_rel_2008_1110_v2, rast_2008_0924, rast_rel_2008_09_29, rast_rel_2008_09_30, rast_rel_2008_10_09, rast_rel_2008_10_29, rast_rel_2008_11_24, rast_rel_2008_12_18, rast_release_2008_09_29
Changes since 1.29: +1 -2 lines
Diff to previous 1.29
Edited mgrast menu

Revision 1.29 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Aug 13 16:47:12 2008 UTC (11 years, 3 months ago) by dsouza
Branch: MAIN
Changes since 1.28: +2 -1 lines
Diff to previous 1.28
Change to mg-rast menu

Revision 1.28 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Jul 30 19:23:07 2008 UTC (11 years, 3 months ago) by jared
Branch: MAIN
CVS Tags: rast_rel_2008_08_07
Changes since 1.27: +1 -1 lines
Diff to previous 1.27
minor metagenome menu change

Revision 1.27 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Jul 29 19:02:21 2008 UTC (11 years, 3 months ago) by jared
Branch: MAIN
Changes since 1.26: +8 -50 lines
Diff to previous 1.26
updated metagenome menu

Revision 1.26 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Jul 24 18:22:07 2008 UTC (11 years, 3 months ago) by dsouza
Branch: MAIN
Changes since 1.25: +1 -1 lines
Diff to previous 1.25
change mgrast menu for blast page

Revision 1.25 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Jul 16 19:58:43 2008 UTC (11 years, 4 months ago) by jared
Branch: MAIN
Changes since 1.24: +4 -0 lines
Diff to previous 1.24
Added mg-rast data variables

Revision 1.24 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Jul 14 20:13:30 2008 UTC (11 years, 4 months ago) by wilke
Branch: MAIN
Changes since 1.23: +30 -20 lines
Diff to previous 1.23
changed menu

Revision 1.23 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Jul 7 16:21:47 2008 UTC (11 years, 4 months ago) by wilke
Branch: MAIN
CVS Tags: rast_rel_2008_07_21
Changes since 1.22: +9 -0 lines
Diff to previous 1.22
new menu entry for metagenomes - view job and upload new metagenome

Revision 1.22 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Jun 27 22:08:22 2008 UTC (11 years, 4 months ago) by wilke
Branch: MAIN
Changes since 1.21: +1 -1 lines
Diff to previous 1.21
changed default dataset from SEED:Subsystem to SEED:subsystem_tax

Revision 1.21 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Jun 24 17:13:12 2008 UTC (11 years, 4 months ago) by paczian
Branch: MAIN
Changes since 1.20: +2 -2 lines
Diff to previous 1.20
-.-

Revision 1.20 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Jun 24 17:08:14 2008 UTC (11 years, 4 months ago) by paczian
Branch: MAIN
Changes since 1.19: +3 -4 lines
Diff to previous 1.19
did what I said I did in the last change, except now it works

Revision 1.19 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Jun 24 16:51:06 2008 UTC (11 years, 4 months ago) by paczian
Branch: MAIN
Changes since 1.18: +2 -1 lines
Diff to previous 1.18
now using FortyEightMeta::SimDB only when absolutely neccessary...

Revision 1.18 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Jun 23 19:26:56 2008 UTC (11 years, 5 months ago) by paczian
Branch: MAIN
Changes since 1.17: +21 -1 lines
Diff to previous 1.17
added method get_public_metagenomes

Revision 1.17 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Jun 23 16:19:39 2008 UTC (11 years, 5 months ago) by paczian
Branch: MAIN
Changes since 1.16: +20 -1 lines
Diff to previous 1.16
added method is_public_metagenome (guess what it does! ;) )

Revision 1.16 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Jun 18 20:33:36 2008 UTC (11 years, 5 months ago) by paczian
Branch: MAIN
Changes since 1.15: +40 -36 lines
Diff to previous 1.15
adjusted menus and page titles

Revision 1.15 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Jun 18 20:08:08 2008 UTC (11 years, 5 months ago) by dsouza
Branch: MAIN
Changes since 1.14: +3 -2 lines
Diff to previous 1.14
metagenome menu -- added 'download', removed ORF fasta.

Revision 1.14 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Jun 13 20:52:12 2008 UTC (11 years, 5 months ago) by paczian
Branch: MAIN
Changes since 1.13: +1 -1 lines
Diff to previous 1.13
changed naming of kegg menu entry

Revision 1.13 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Jun 13 17:12:51 2008 UTC (11 years, 5 months ago) by paczian
Branch: MAIN
Changes since 1.12: +1 -1 lines
Diff to previous 1.12
changed Comparative Tools to Tools for metagenome menu

Revision 1.12 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Jun 11 21:17:56 2008 UTC (11 years, 5 months ago) by olson
Branch: MAIN
Changes since 1.11: +88 -33 lines
Diff to previous 1.11
Update of frontend code to match new MGRAST2 backend/db changes.

Revision 1.11 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Jun 10 22:01:19 2008 UTC (11 years, 5 months ago) by bartels
Branch: MAIN
Changes since 1.10: +1 -1 lines
Diff to previous 1.10
*** empty log message ***

Revision 1.10 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Apr 29 18:44:00 2008 UTC (11 years, 6 months ago) by jared
Branch: MAIN
CVS Tags: rast_rel_2008_06_16, rast_rel_2008_06_18
Changes since 1.9: +2 -0 lines
Diff to previous 1.9
Added item to mg-rast Comparative tools menu

Revision 1.9 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Apr 18 20:09:18 2008 UTC (11 years, 7 months ago) by paarmann
Branch: MAIN
CVS Tags: rast_rel_2008_04_23
Changes since 1.8: +51 -85 lines
Diff to previous 1.8
latest fixes

Revision 1.8 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Apr 11 15:24:55 2008 UTC (11 years, 7 months ago) by paarmann
Branch: MAIN
Changes since 1.7: +3 -0 lines
Diff to previous 1.7
added Features page

Revision 1.7 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Apr 7 21:20:15 2008 UTC (11 years, 7 months ago) by paarmann
Branch: MAIN
Changes since 1.6: +2 -2 lines
Diff to previous 1.6
fixed quoting bug

Revision 1.6 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Mar 31 18:15:49 2008 UTC (11 years, 7 months ago) by paarmann
Branch: MAIN
Changes since 1.5: +66 -16 lines
Diff to previous 1.5
updated methods to get metagenome and organism menu

Revision 1.5 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Jan 22 19:59:58 2008 UTC (11 years, 10 months ago) by paarmann
Branch: MAIN
Changes since 1.4: +1 -1 lines
Diff to previous 1.4
fix for empty alignment_length

Revision 1.4 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Jan 15 16:59:12 2008 UTC (11 years, 10 months ago) by paarmann
Branch: MAIN
Changes since 1.3: +9 -1 lines
Diff to previous 1.3
*** empty log message ***

Revision 1.3 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Dec 13 17:50:20 2007 UTC (11 years, 11 months ago) by paarmann
Branch: MAIN
Changes since 1.2: +105 -55 lines
Diff to previous 1.2
whatever it did before, it no longer does

Revision 1.2 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Jun 14 15:30:29 2007 UTC (12 years, 5 months ago) by paczian
Branch: MAIN
Changes since 1.1: +2 -2 lines
Diff to previous 1.1
initial version

Revision 1.1 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Jun 4 20:39:49 2007 UTC (12 years, 5 months ago) by paczian
Branch: MAIN
Branch point for: SeedViewer
Initial revision

This form allows you to request diffs between any two revisions of this file. For each of the two "sides" of the diff, select a symbolic revision name using the selection box, or choose 'Use Text Field' and enter a numeric revision.

  Diffs between and
  Type of Diff should be a

Sort log by:

MCS Webmaster
ViewVC Help
Powered by ViewVC 1.0.3