[Bio] Log of /SeedViewer/MetagenomeAnalysis.pm

Revision 1.21 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Aug 20 18:27:15 2008 UTC (11 years, 3 months ago) by jared
Branch: MAIN
CVS Tags: mgrast_rel_2008_0806
Changes since 1.20: +14 -4 lines
Diff to previous 1.20

Added tax2genomeid sub

Revision 1.20 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Aug 15 22:46:48 2008 UTC (11 years, 4 months ago) by dsouza
Branch: MAIN
Changes since 1.19: +5 -5 lines
Diff to previous 1.19

Commented out some prints to STDERR

Revision 1.19 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Aug 13 20:50:41 2008 UTC (11 years, 4 months ago) by jared
Branch: MAIN
Changes since 1.18: +39 -1 lines
Diff to previous 1.18

Added subset genome sub

Revision 1.18 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Jul 14 22:12:45 2008 UTC (11 years, 5 months ago) by arodri7
Branch: MAIN
CVS Tags: rast_rel_2008_08_07
Changes since 1.17: +30 -2 lines
Diff to previous 1.17

added alignment view in the subset page, needed to add get_best_hit_for_sequence

Revision 1.17 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Jun 13 16:47:56 2008 UTC (11 years, 6 months ago) by paczian
Branch: MAIN
CVS Tags: rast_rel_2008_07_21
Changes since 1.16: +2 -2 lines
Diff to previous 1.16

fixed query for subsystem counts

Revision 1.16 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Jun 13 14:53:32 2008 UTC (11 years, 6 months ago) by paczian
Branch: MAIN
Changes since 1.15: +1 -1 lines
Diff to previous 1.15

added where clause to get_taxa_counts

Revision 1.15 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Jun 12 19:19:19 2008 UTC (11 years, 6 months ago) by paczian
Branch: MAIN
Changes since 1.14: +54 -0 lines
Diff to previous 1.14

fixed quoting

Revision 1.14 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Jun 12 15:18:36 2008 UTC (11 years, 6 months ago) by paczian
Branch: MAIN
Changes since 1.13: +9 -3 lines
Diff to previous 1.13

fixed quoting in get_genome_id

Revision 1.13 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Jun 11 21:17:56 2008 UTC (11 years, 6 months ago) by olson
Branch: MAIN
Changes since 1.12: +56 -18 lines
Diff to previous 1.12

Update of frontend code to match new MGRAST2 backend/db changes.

Revision 1.12 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Jun 11 20:52:32 2008 UTC (11 years, 6 months ago) by jared
Branch: MAIN
Changes since 1.11: +2 -2 lines
Diff to previous 1.11

fixed get_genome_id

Revision 1.11 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Jun 11 20:48:58 2008 UTC (11 years, 6 months ago) by jared
Branch: MAIN
Changes since 1.10: +12 -1 lines
Diff to previous 1.10

added get_genome_id

Revision 1.10 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Jun 11 15:17:20 2008 UTC (11 years, 6 months ago) by jared
Branch: MAIN
Changes since 1.9: +8 -10 lines
Diff to previous 1.9

All queries updated, still need to be fully tested

Revision 1.9 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Jun 10 20:07:34 2008 UTC (11 years, 6 months ago) by jared
Branch: MAIN
Changes since 1.8: +24 -20 lines
Diff to previous 1.8

a couple queries changed

Revision 1.8 - (view) (download) (as text) (annotate) - [select for diffs]
Wed May 7 20:31:19 2008 UTC (11 years, 7 months ago) by jared
Branch: MAIN
CVS Tags: rast_rel_2008_06_16, rast_rel_2008_06_18
Changes since 1.7: +2 -2 lines
Diff to previous 1.7

Added host to Pg DBI connect -jw

Revision 1.7 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Apr 30 21:00:42 2008 UTC (11 years, 7 months ago) by olson
Branch: MAIN
Changes since 1.6: +19 -4 lines
Diff to previous 1.6

Support postgres.

Revision 1.6 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Apr 29 23:01:55 2008 UTC (11 years, 7 months ago) by parrello
Branch: MAIN
Changes since 1.5: +7 -1 lines
Diff to previous 1.5

Fixed a POD error.

Revision 1.5 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Apr 29 14:08:42 2008 UTC (11 years, 7 months ago) by jared
Branch: MAIN
Changes since 1.4: +34 -1 lines
Diff to previous 1.4

Added method for MetagenomeRecruitmentPlot.pm -jw

Revision 1.4 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Apr 22 19:56:18 2008 UTC (11 years, 7 months ago) by paarmann
Branch: MAIN
CVS Tags: rast_rel_2008_04_23
Changes since 1.3: +32 -2 lines
Diff to previous 1.3

added method to get hits for sequence

Revision 1.3 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Apr 18 20:09:19 2008 UTC (11 years, 7 months ago) by paarmann
Branch: MAIN
Changes since 1.2: +322 -9 lines
Diff to previous 1.2

latest fixes

Revision 1.2 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Apr 10 14:46:51 2008 UTC (11 years, 8 months ago) by paarmann
Branch: MAIN
Changes since 1.1: +1 -2 lines
Diff to previous 1.1

removed debug statement

Revision 1.1 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Apr 7 21:20:45 2008 UTC (11 years, 8 months ago) by paarmann
Branch: MAIN

initial wrapper around mg sims database

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