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Revision 1.2 - (download) (as text) (annotate)
Fri Oct 15 18:11:22 2004 UTC (15 years, 1 month ago) by efrank
Branch: MAIN
CVS Tags: mgrast_dev_08112011, mgrast_dev_08022011, rast_rel_2014_0912, rast_rel_2008_06_18, rast_rel_2008_06_16, mgrast_dev_04082011, Root-bobdev_news, merge-trunktag-bobdev_news-2, merge-trunktag-bobdev_news-1, rast_rel_2009_05_18, rast_rel_2009_0925, rast_rel_2010_0118, preTreatmanDyn, merge-trunktag-bodev_news-3, rast_rel_2009_02_05, rast_rel_2011_0119, rast_rel_2008_12_18, rast_rel_2008_10_09, rast_release_2008_09_29, mgrast_rel_2008_0919, rast_rel_2009_07_09, rast_rel_2011_0928, mgrast_rel_2008_0917, mgrast_dev_04052011, sc04-finalDay, merge-bodev_news-3, mobedac_release_05302012, rast_rel_2010_0928, mgrast_version_3_2, gunk, caBIG-05Apr06-00, mgrast_dev_02212011, mgrast_rel_2008_0625, mgrast_release_3_0_4, mgrast_release_3_0_2, mgrast_release_3_0_3, V00-00-15, merge-bobdev_news-2, merge-bobdev_news-1, mgrast_dev_05262011, mgrast_rel_2008_0806, rast_rel_2008_08_07, myrast_33, rast_rel_2008_09_29, mgrast_dev_02222011, stMigration0, mgrast_dev_10262011, rast_rel_2008_11_24, sc2004-4, sc2004-3, sc2004-2, sc2004-1, sc2004-0, mgrast_dev_06072011, rast_rel_2008_09_30, before-dynamics-persistence, rast_rel_2008_10_29, rast_rel_2014_0729, mgrast_dev_03252011, mgrast_release_3_0, rast_rel_2010_1206, mgrast_rel_2008_0924, lwc, mgrast_dev_03312011, mgrast_release_3_1_2, mgrast_release_3_1_1, mgrast_release_3_1_0, mgrast_dev_04132011, makeScriptHeaders, rast_rel_2008_07_21, mgrast_rel_2008_0923, mgrast_release_3_0_1, rast_rel_2010_0827, rast_rel_2009_03_26, rast_2008_0924, mgrast_dev_12152011, rast_rel_2010_0526, rast_rel_2008_04_23, caBIG-00-00-00, post-st-migration2, mgrast_rel_2008_1110_v2, mgrast_dev_04012011, treatman-lastDay-0, mgrast_rel_2008_1110, post-st-migration, caBIG-13Feb06-00, HEAD
Branch point for: Branch-bobdev_news
Changes since 1.1: +1 -1 lines
comment out source of env-init from AG.  that's only needed for
building ag, not running agsinst it.

###
# env setup so must be sourced, not run
# 29 June 04: translated to bash by larry sheradon
#
# nb: sysbiorc.csh is most actively used and the .sh often ends up out of
# date.  be careful.
###

##
# stuff for external dependencies.
##

export EXTERNAL_REL=0.0.2
export EXTERNAL=/homes/SysBio/external/releases/$EXTERNAL_REL

##
# Release tools stuff
##

export RTCURRENT=rtBoot
export RTROOT=/homes/SysBio
export RTDIST=$RTROOT/dist
export RTARCH=linux-rh73

alias rtpath='source $RTDIST/releases/$RTCURRENT/ReleaseTools/RTPath.sh'

# make sure they have some sort of path

export PATH=$EXTERNAL/bin:$PATH:$EXTERNAL/AccessGrid/bin
rtpath


# CVS Repo.  You can also do :ext:username@biocvs if you need to, but this
# should work in general:

export CVSROOT=:ext:biocvs.mcs.anl.gov:/disks/cvs/bio
export CVS_RSH=ssh

export CYTOSCAPE_HOME=/homes/SysBio/external/packages/Cytoscape1.1.1/
export CYTOSCAPE_COMMAND=$CYTOSCAPE_HOME/cytoscape.sh
export CYTOSCAPE_DISPLAY=$DISPLAY


##
#  What follows are set up as appends so that earlier configs can supercede.
##

# systems dot lacks fonts.  we dumped needed fonts here:
export DOTFONTPATH=$DOTFONTPATH:/homes/SysBio/external/X11R6/lib/X11/fonts/truetype

export PYTHONPATH=$PYTHONPATH:/homes/SysBio/external/releases/$EXTERNAL_REL/lib/python2.2/site-packages

export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:$EXTERNAL/lib/:/soft/com/packages/oracle/OraHome1/lib

# Shared AG installation
#. $EXTERNAL/AccessGrid/env-init.sh

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