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Revision 1.2 - (download) (as text) (annotate)
Fri Oct 15 18:11:22 2004 UTC (15 years, 1 month ago) by efrank
Branch: MAIN
CVS Tags: mgrast_dev_08112011, mgrast_dev_08022011, rast_rel_2014_0912, rast_rel_2008_06_18, rast_rel_2008_06_16, mgrast_dev_04082011, Root-bobdev_news, merge-trunktag-bobdev_news-2, merge-trunktag-bobdev_news-1, rast_rel_2009_05_18, rast_rel_2009_0925, rast_rel_2010_0118, preTreatmanDyn, merge-trunktag-bodev_news-3, rast_rel_2009_02_05, rast_rel_2011_0119, rast_rel_2008_12_18, rast_rel_2008_10_09, rast_release_2008_09_29, mgrast_rel_2008_0919, rast_rel_2009_07_09, rast_rel_2011_0928, mgrast_rel_2008_0917, mgrast_dev_04052011, sc04-finalDay, merge-bodev_news-3, mobedac_release_05302012, rast_rel_2010_0928, mgrast_version_3_2, gunk, caBIG-05Apr06-00, mgrast_dev_02212011, mgrast_rel_2008_0625, mgrast_release_3_0_4, mgrast_release_3_0_2, mgrast_release_3_0_3, V00-00-15, merge-bobdev_news-2, merge-bobdev_news-1, mgrast_dev_05262011, mgrast_rel_2008_0806, rast_rel_2008_08_07, myrast_33, rast_rel_2008_09_29, mgrast_dev_02222011, stMigration0, mgrast_dev_10262011, rast_rel_2008_11_24, sc2004-4, sc2004-3, sc2004-2, sc2004-1, sc2004-0, mgrast_dev_06072011, rast_rel_2008_09_30, before-dynamics-persistence, rast_rel_2008_10_29, rast_rel_2014_0729, mgrast_dev_03252011, mgrast_release_3_0, rast_rel_2010_1206, mgrast_rel_2008_0924, lwc, mgrast_dev_03312011, mgrast_release_3_1_2, mgrast_release_3_1_1, mgrast_release_3_1_0, mgrast_dev_04132011, makeScriptHeaders, rast_rel_2008_07_21, mgrast_rel_2008_0923, mgrast_release_3_0_1, rast_rel_2010_0827, rast_rel_2009_03_26, rast_2008_0924, mgrast_dev_12152011, rast_rel_2010_0526, rast_rel_2008_04_23, caBIG-00-00-00, post-st-migration2, mgrast_rel_2008_1110_v2, mgrast_dev_04012011, treatman-lastDay-0, mgrast_rel_2008_1110, post-st-migration, caBIG-13Feb06-00, HEAD
Branch point for: Branch-bobdev_news
Changes since 1.1: +5 -6 lines
comment out source of env-init from AG.  that's only needed for
building ag, not running agsinst it.

###
# env setup so must be sourced, not run
#
# This is a sample of a typical system-level configuration that users
# could source and thereafter be ready to use the ReleaseTools.  The
# key thing is the block of environment variables, RTROOT, etc. (see below).
#
###

##
# Release tools stuff
##

setenv RTCURRENT rtBoot
setenv RTROOT    ~efrank/KahRoot
setenv RTDIST    ${RTROOT}/dist
setenv RTARCH    linux-gentoo

alias rtpath 'source $RTDIST/releases/$RTCURRENT/ReleaseTools/RTPath.csh'
##
# Stuff for external dependencies.  These are software that we need, but
# do not ship.
##

setenv EXTERNAL_REL 0.0.2
set    EXTERNAL=$RTROOT/external/releases/$EXTERNAL_REL

##
# make sure they have some sort of path, but see also RTPath.csh
##

set path=(  $EXTERNAL/bin $path $EXTERNAL/AccessGrid/bin )
rtpath

##
# CVS Repo.  You can also do :ext:username@biocvs if you need to, but this
# should work in general:
##

setenv CVSROOT :ext:biocvs.mcs.anl.gov:/disks/cvs/bio
setenv CVS_RSH ssh

setenv CYTOSCAPE_HOME /homes/SysBio/external/packages/Cytoscape1.1.1/
setenv CYTOSCAPE_COMMAND $CYTOSCAPE_HOME/cytoscape.sh
if ( $?DOTFONTPATH ) then
    setenv CYTOSCAPE_DISPLAY $DISPLAY
endif



###
#  What follows are set up as appends so that earlier configs can supercede.
##

# systems dot lacks fonts.  we dumped needed fonts here:


if ( $?DOTFONTPATH ) then
   setenv DOTFONTPATH ${DOTFONTPATH}:/homes/SysBio/external/X11R6/lib/X11/fonts/truetype
else
   setenv DOTFONTPATH /homes/SysBio/external/X11R6/lib/X11/fonts/truetype
endif


if ( $?PYTHONPATH ) then
   setenv PYTHONPATH  ${PYTHONPATH}:/homes/SysBio/external/releases/${EXTERNAL_REL}/lib/python2.2/site-packages
else
   setenv PYTHONPATH /homes/SysBio/external/releases/${EXTERNAL_REL}/lib/python2.2/site-packages
endif


if ( $?LD_LIBRARY_PATH ) then
   setenv LD_LIBRARY_PATH ${LD_LIBRARY_PATH}:${EXTERNAL}/lib/:/soft/com/packages/oracle/OraHome1/lib
else
  setenv LD_LIBRARY_PATH ${EXTERNAL}/lib/:/soft/com/packages/oracle/OraHome1/lib
endif

##
# Configure shared AG installation
##

# only needed for build, not for run
#source $EXTERNAL/AccessGrid/env-init.csh


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