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Revision 1.6 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Sep 23 20:22:29 2003 UTC (16 years ago) by efrank
Branch: MAIN
CVS Tags: HEAD
Changes since 1.5: +14 -8 lines
Diff to previous 1.5
SbwFactory:
	more fixes for writing SBML.

fixSbmlForCytoScape:

#
# libSbml-2.0.1 generates level 2 sbml.  Cytoscape only reads level 1.
# This sed script doesn't really convert 2 to 1.  It does enough hacks
# on the sbml to make it possible for cytoscape to read it.
#
# A better approach all around would be to generate a SIF file.
#

Revision 1.5 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Sep 22 20:12:04 2003 UTC (16 years ago) by efrank
Branch: MAIN
Changes since 1.4: +113 -28 lines
Diff to previous 1.4
dumptoSbml
	give it a RecoId and it dumps SBML

SbmlFactory:
	put in int() for stoich conversions.  may not be right.

SbwFactory:
  	support writing SBML.
	put in int() for stoich conversions.  may not be right

Revision 1.4 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Sep 19 04:18:17 2003 UTC (16 years, 1 month ago) by efrank
Branch: MAIN
Changes since 1.3: +19 -3 lines
Diff to previous 1.3
Adding ability to write out sbml.  temporary sync with cvs.

Revision 1.3 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Sep 18 23:24:48 2003 UTC (16 years, 1 month ago) by hwang
Branch: MAIN
Changes since 1.2: +21 -1 lines
Diff to previous 1.2
	Fixed spelling mistakes. Everything compiles now.

Revision 1.2 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Sep 18 21:18:40 2003 UTC (16 years, 1 month ago) by efrank
Branch: MAIN
Changes since 1.1: +207 -5 lines
Diff to previous 1.1
Move all of SbmlFactory into SbwFactory and migrate SBMLtoRecoElem to
match.

SBMLtoRecoElem.cc:
   makes an SbwFactory rather than SbmlFactory and then uses it

SbmlFactory.cc, SbmlFactory.hh:
   ???

SbwFactory.{cc,hh}
   Now has guts fo SbmlFactory plus skeleton for writeToSbmlFile(char* filename)

Revision 1.1 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Jul 7 17:52:33 2003 UTC (16 years, 3 months ago) by efrank
Branch: MAIN
Class to act as factory for RecoElem's as for BssFactory in RecoReadoutOracle.
This one gets stuff from the RecoElemSBWServer.

Probably should move the Sbml converter into this as the dependencies are
consistent.

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