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1 : paarmann 1.1 #
2 :     # Copyright (c) 2003-2006 University of Chicago and Fellowship
3 :     # for Interpretations of Genomes. All Rights Reserved.
4 :     #
5 :     # This file is part of the SEED Toolkit.
6 :     #
7 :     # The SEED Toolkit is free software. You can redistribute
8 :     # it and/or modify it under the terms of the SEED Toolkit
9 :     # Public License.
10 :     #
11 :     # You should have received a copy of the SEED Toolkit Public License
12 :     # along with this program; if not write to the University of Chicago
13 :     # at info@ci.uchicago.edu or the Fellowship for Interpretation of
14 :     # Genomes at veronika@thefig.info or download a copy from
15 :     # http://www.theseed.org/LICENSE.TXT.
16 :     #
17 :    
18 :     #
19 :     # seed_running_perl.fragement is the piece of perl code that
20 :     # checks to see if the seed server is up, and prints a message and returns
21 :     # if it is not.
22 :     #
23 :     SEED_RUNNING_PERL = seed_running_perl.fragment
24 :    
25 :     PERLCGISCRIPTS := $(subst .pl,,$(wildcard *.cgi))
26 :    
27 :     PERL_LIB = $(wildcard *.pm) \
28 :     $(wildcard WebPage/*.pm) \
29 :     $(wildcard RAST/*.pm) \
30 : paarmann 1.2 $(wildcard Metagenomics/*.pm)
31 : paarmann 1.1
32 :     WEBPAGES := $(wildcard *.tmpl) \
33 :     $(wildcard images/*.png) \
34 :     $(wildcard images/*.jpeg) \
35 :     $(wildcard css/*.css)
36 :    
37 :     INST_PERL_LIB = $(foreach var, $(PERL_LIB), $(libdir)/$(PKGNAME)/$(var))
38 :    
39 : paarmann 1.3 PERL_BIN_SRC := $(wildcard *.pl)
40 :     PERL_BIN = $(subst .pl,, $(PERL_BIN_SRC))
41 :    
42 :    
43 :     all: lib bin
44 : paarmann 1.1
45 :     show:
46 :     @echo cgis $(foreach var, $(PERLCGISCRIPTS), $(cgidir)/$(var))
47 :     @echo top $(TOPDIR)
48 :     @echo pkg $(PKGNAME)
49 :     @echo toolhdr $(TOOL_HDR)
50 : paarmann 1.3 bin: $(foreach var, $(PERL_BIN), $(bindir)/$(var))
51 : paarmann 1.1
52 : paarmann 1.3 lib: $(foreach var, $(PERLCGISCRIPTS), $(cgidir)/$(var)) copy_htaccess $(INST_PERL_LIB) $(foreach var, $(WEBPAGES), $(cgidir)/Html/$(var)) rights
53 : paarmann 1.1
54 :     htaccess_src = $(RTROOT)/config/all.htaccess
55 :     htaccess_dst = $(cgidir)/.htaccess
56 :    
57 :     copy_htaccess: force
58 :     if test -f $(htaccess_src); then \
59 :     cp $(htaccess_src) $(htaccess_dst) ; \
60 :     fi
61 :    
62 :     force:
63 :    
64 :     schematools:
65 :     stDeclFiles:
66 :     stGeneratedFiles:
67 :     test:
68 :     clean:
69 :    
70 :     $(cgidir)/%: $(TOPDIR)/$(PKGNAME)/% $(TOOL_HDR)
71 :     ( cat $(TOOL_HDR) $< > $@; chmod +x $@ )
72 :    
73 :     $(cgidir)/Html/%: $(TOPDIR)/$(PKGNAME)/%
74 :     cp -p $< $(cgidir)/Html/.
75 :    
76 : paarmann 1.3 $(bindir)/%: $(TOPDIR)/$(PKGNAME)/%.pl $(TOOL_HDR)
77 : paarmann 1.4 ( cat $(TOOL_HDR) $< > $@; chmod +x $@ )
78 : paarmann 1.3
79 : paarmann 1.1
80 :     #
81 :     # We have a config problem at the moment. I do not want to depend
82 :     # upon explicit calls to other packages, as done here nor do I want
83 :     # to assume that package was built first. For now, we live with this.
84 :    
85 :     #$(TOOL_HDR):
86 :     # cd $(workdir); $(TOPDIR)/FigCommon/configure-env $(RTARCH) $(TOPDIR)
87 :    
88 :    
89 :     #
90 :     # Since our lib files have directories, need to create the target
91 :     # directory if it doesn't yet exist.
92 :     #
93 :     $(libdir)/$(PKGNAME)/%.pm: $(TOPDIR)/$(PKGNAME)/%.pm
94 :     tgt_dir=`dirname $@`; \
95 :     if [ ! -d $$tgt_dir ] ; then \
96 :     mkdir $$tgt_dir; \
97 :     fi
98 :     cp -p $< $@
99 :    
100 :     rights:
101 :     cd $(TOPDIR)/WebApplication/scripts; \
102 :     perl create_application_rights_module.pl -path $(TOPDIR) -application $(PKGNAME)

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