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Revision 1.32 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Jul 12 20:38:19 2004 UTC (15 years, 3 months ago) by efrank
Branch: MAIN
CVS Tags: HEAD, MigrateToNewPackage, V00-00-03, forRick-14Jul04-0, forRick-14Jul04-1, mass-spec-01, mass-spec-02, mass-spec-03
Changes since 1.31: +0 -150 lines
Diff to previous 1.31
KahOM/KahDataMgr:
	first pass at top level data manager to be returned from catalogentry read

Schema:
	added KahDatabaseInfo to put fid into database.
	create- changed so that no long initialize name of top catalogEntry (see below)
	destroyBss- changed !#/usr/bin/py to env py

FaST:
	txMgr - fixed close()...added self
	BssFactory - now gets fid via kahDatabaseInfo in database

PyGUI
	change so that something or another

Revision 1.31 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Jul 2 22:08:02 2004 UTC (15 years, 3 months ago) by hwang
Branch: MAIN
Changes since 1.30: +7 -8 lines
Diff to previous 1.30
	To maintain state, self was taken out of local variables

Revision 1.30 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Jun 23 19:19:10 2004 UTC (15 years, 3 months ago) by efrank
Branch: MAIN
CVS Tags: larrys-08jul04
Changes since 1.29: +1 -1 lines
Diff to previous 1.29
migrate import statements to follow move of Recoelem, Reaction, Reactant
from FaST to KahOM

Revision 1.29 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Jun 23 19:02:51 2004 UTC (15 years, 3 months ago) by efrank
Branch: MAIN
Changes since 1.28: +104 -62 lines
Diff to previous 1.28
Migrate data classes to really use FoundryItem.
gut a bunch of old dead code.
merge what used to be separate seed/bss into single.

Revision 1.28 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Mar 29 21:57:28 2004 UTC (15 years, 6 months ago) by hwang
Branch: MAIN
CVS Tags: V00-00-02, forKubal-15Jun04
Changes since 1.27: +12 -8 lines
Diff to previous 1.27
	MetabolitePanel.py
		local variable made global
	RXpanel.py
		Searching for Bss works with Aux as " "

Revision 1.27 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Mar 26 17:12:46 2004 UTC (15 years, 6 months ago) by efrank
Branch: MAIN
Changes since 1.26: +8 -11 lines
Diff to previous 1.26
Modifications to install the new Catalog code, FoundryId stuff.  I ripped
out old code as well:  the list of foundryComboBoxes is gone since we now
have just one combo box.

the notion of FoundryId's intVal is gone.  at least for the moment.  it's too hard
at the mment to have a (bottleneck!) central authority to manage the intVals.

so, starting now, foundryId's are based on strings that are notionally URLs and
its up to the dataFoundry manager to make sure all distinct instances at his
site have distinct urls.

this also means that if a foundry moves, then the history information that
refers to it becomes incorrect.

Revision 1.26 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Mar 25 00:49:56 2004 UTC (15 years, 6 months ago) by efrank
Branch: MAIN
Changes since 1.25: +1 -1 lines
Diff to previous 1.25
Migrating to new Catalog, Catlogentry, etc.  This is an intermediary
sync

Revision 1.25 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Mar 19 20:43:12 2004 UTC (15 years, 7 months ago) by hwang
Branch: MAIN
Changes since 1.24: +6 -3 lines
Diff to previous 1.24
        Fixed the individual panels to link up with foundryComboBox

Revision 1.24 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Feb 25 17:08:17 2004 UTC (15 years, 7 months ago) by hwang
Branch: MAIN
Changes since 1.23: +3 -3 lines
Diff to previous 1.23
     Changed all the files so that the past inconsistancies of variable and classes names
 are consistant. I.E. MainLayout import MainLayout.
     In MainLayout, separate functions are made for each panel.

Revision 1.23 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Feb 9 19:33:31 2004 UTC (15 years, 8 months ago) by efrank
Branch: MAIN
Changes since 1.22: +3 -3 lines
Diff to previous 1.22
correct all of the imports to standard form of from foo.bar import bar.
weren't using package name, foo in many cases

Revision 1.22 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Nov 12 22:56:33 2003 UTC (15 years, 11 months ago) by efrank
Branch: MAIN
CVS Tags: SC-01, SC-02, sc-12Nov03-linux-02, sc-14Nov03-linux-01, sc-14Nov03-linux-02
Changes since 1.21: +60 -12 lines
Diff to previous 1.21
Lots of changes to start port to mac.  lots of fiddling with layout because
we are doing something wrong, and it shows up on Mac.

Also alot of work to make enzymes work, including EC.  focus is on seed.

Revision 1.21 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Aug 18 15:55:57 2003 UTC (16 years, 2 months ago) by efrank
Branch: MAIN
CVS Tags: V00-00-00, V00-00-01, efrank-initialSeed-04Nov03, sc-06Nov03-linuxLeft-01, sc-12Nov03-linux-01, sc-works-00
Changes since 1.20: +13 -0 lines
Diff to previous 1.20
Start documenting the code a trifle.  All files have been modified by adding
the list of def'd methods at the top of the class.  Must add description
strings, but this is a start.

Revision 1.20 - (view) (download) (as text) (annotate) - [select for diffs]
Sat Aug 16 20:51:50 2003 UTC (16 years, 2 months ago) by efrank
Branch: MAIN
Changes since 1.19: +10 -4 lines
Diff to previous 1.19
Lots of changes here and there to get reaction searching working.
start to work on right-click-in reaction list_box (recoelem page).

Revision 1.19 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Aug 15 20:41:25 2003 UTC (16 years, 2 months ago) by hwang
Branch: MAIN
Changes since 1.18: +21 -0 lines
Diff to previous 1.18
	MetabolitePanel.py
	   Add clear to the bottom selected grid
	RXFromMetPageDialog.py
	   The checkboxes implemented
	RXpanel.py
	   In the process of wiring in searching. not done yet

Revision 1.18 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Aug 15 14:54:53 2003 UTC (16 years, 2 months ago) by hwang
Branch: MAIN
Changes since 1.17: +10 -0 lines
Diff to previous 1.17
	MetabolitePanel.py
	    The add entries is shown on the search grid

Revision 1.17 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Aug 14 23:10:20 2003 UTC (16 years, 2 months ago) by hwang
Branch: MAIN
Changes since 1.16: +4 -6 lines
Diff to previous 1.16
	MetabolitePanel.py and Rxpanel.py
	  changed clear/select. replace NGrids to use GetNumberRows() instead

Revision 1.16 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Aug 14 22:52:50 2003 UTC (16 years, 2 months ago) by hwang
Branch: MAIN
Changes since 1.15: +1 -1 lines
Diff to previous 1.15
	MainLayout.py
	   Added Enzyme page
	MetabolitePanel.py
	   grid.ClearGrid() added
	RXFromMetPageDialog.py
	   fixed some layout properties
	RXpanel.py
	   text is Enable(False) when FromMetabolitePage is picked

Revision 1.15 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Aug 14 20:42:25 2003 UTC (16 years, 2 months ago) by hwang
Branch: MAIN
Changes since 1.14: +55 -3 lines
Diff to previous 1.14
	MainLayout.py
	   Added changes to rxWindow
	MetabolitePanel.py
	   Links up with DoubleTextEntryDialog.py
	   Add new metabolites
	RXpanel.py
	   If ComboBox is "FromMetPageDialog", pops up a grid and put in the appropriate info
		from MetPageDialog bottom grid
	RXFromMetPageDialog.py
	   Layout of search grid for FromMetPageDialog

Revision 1.14 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Aug 8 21:34:39 2003 UTC (16 years, 2 months ago) by hwang
Branch: MAIN
Changes since 1.13: +2 -2 lines
Diff to previous 1.13
	MetabolitePanel.py
		changed orAndComboBox to orAndMetabsComboBox

Revision 1.13 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Aug 8 21:27:47 2003 UTC (16 years, 2 months ago) by hwang
Branch: MAIN
Changes since 1.12: +6 -23 lines
Diff to previous 1.12
	MainLayout.py
		Add to Rxpanel
	MetabolitePanel.py
		A failed attempt to get bss/wit panel changed.

Revision 1.12 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Aug 8 21:14:57 2003 UTC (16 years, 2 months ago) by efrank
Branch: MAIN
Changes since 1.11: +58 -8 lines
Diff to previous 1.11
make Wit searches work.

Revision 1.11 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Aug 7 22:10:39 2003 UTC (16 years, 2 months ago) by hwang
Branch: MAIN
Changes since 1.10: +3 -1 lines
Diff to previous 1.10
	MetabolitePanel.py
		error fixed with select for bssgrid

Revision 1.10 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Aug 7 21:59:48 2003 UTC (16 years, 2 months ago) by hwang
Branch: MAIN
Changes since 1.9: +22 -0 lines
Diff to previous 1.9
	MainLayout.py
		added info to get number of rows for bottomGrid
	MetabolitePanel.py
		Added function for select for bssGrid

Revision 1.9 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Aug 7 20:09:03 2003 UTC (16 years, 2 months ago) by efrank
Branch: MAIN
Changes since 1.8: +6 -3 lines
Diff to previous 1.8
Add ability to do "contains" and "equals" searches on metabolites

Revision 1.8 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Aug 7 20:07:23 2003 UTC (16 years, 2 months ago) by hwang
Branch: MAIN
Changes since 1.7: +2 -1 lines
Diff to previous 1.7
	MainLayout.py -Metabolite window
	  Changed size of init frame
	  Changed size of TopLeft window
	  Changed width of text box
	  Changed bottom grid

 	MetabolitePanel.py
	  theGrid.FitInside()

Revision 1.7 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Aug 7 19:19:35 2003 UTC (16 years, 2 months ago) by hwang
Branch: MAIN
Changes since 1.6: +2 -1 lines
Diff to previous 1.6
	MainLayout.py
	    Adding size changes to Notebook
	MetabolitePanel.py
	    orAndComboBox was changed from andOrCheckBox

Revision 1.6 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Aug 7 19:14:27 2003 UTC (16 years, 2 months ago) by efrank
Branch: MAIN
Changes since 1.5: +6 -3 lines
Diff to previous 1.5
*** empty log message ***

Revision 1.5 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Aug 7 18:06:18 2003 UTC (16 years, 2 months ago) by efrank
Branch: MAIN
Changes since 1.4: +27 -4 lines
Diff to previous 1.4
forgot what i did.  clear button for bssGrid?

Revision 1.4 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Aug 7 16:13:47 2003 UTC (16 years, 2 months ago) by efrank
Branch: MAIN
Changes since 1.3: +1 -0 lines
Diff to previous 1.3
layout:  give more room to bssGrid and start it out with zero rows.
metabolitepanel:  append a row each time ones added

Revision 1.3 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Aug 7 15:43:01 2003 UTC (16 years, 2 months ago) by hwang
Branch: MAIN
Changes since 1.2: +1 -1 lines
Diff to previous 1.2
	MetabolitePanel.py
	    changed comboBox to foundryComboBox
	MainLayout.py
	    added combobox, and labels

Revision 1.2 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Aug 7 02:39:46 2003 UTC (16 years, 2 months ago) by efrank
Branch: MAIN
Changes since 1.1: +53 -6 lines
Diff to previous 1.1
adding to Metabolite panel so that we can search for metabolites.
main.py: move some init stuff out of main.py into associated panel.
mainlayout: clean up and reorg a bit.  lots of renames
rxpanel: commented out to speed up startup.

Revision 1.1 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Aug 6 19:30:27 2003 UTC (16 years, 2 months ago) by hwang
Branch: MAIN
	MainLayout.py
	    Modified the Metabolite panel. i.e. foundry grid, and naming of the panels
	main.py
	    Includes the MetabolitePanel.py
	MetabolitePanel.py
	    Attempt to change the panels, but currently it is unsuccessful.

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