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Revision 1.19 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Jan 17 17:12:47 2006 UTC (12 years, 7 months ago) by efrank
Branch: MAIN
CVS Tags: HEAD, lwc
Changes since 1.18: +24 -23 lines
Diff to previous 1.18
persistence for dynamics stuff
bunch of flux modelinig stuff including flux model building in modeleditor

Revision 1.18 - (view) (download) (as text) (annotate) - [select for diffs]
Sun Dec 4 17:20:34 2005 UTC (12 years, 8 months ago) by efrank
Branch: MAIN
CVS Tags: before-dynamics-persistence
Changes since 1.17: +29 -14 lines
Diff to previous 1.17
1. migrate from deprecated xmlrpcconverter to PrimitiveConverter.  This
makes shared editing by AG work again.  Also, now trivial to add arbitrary
object networks to Model and still ship  between kah instances.  maybe.

2. fix up dynamics stuff.  dunno how charl's stuff ever worked, but it did.
then it didn't.  now it does again.  migrate to classFromPath and rationalize
a bunch of stuff.

Revision 1.17 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Jul 25 18:22:00 2005 UTC (13 years ago) by ctreatma
Branch: MAIN
CVS Tags: treatman-lastDay-0
Changes since 1.16: +10 -3 lines
Diff to previous 1.16
Adding documentation

Revision 1.16 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Jul 22 21:14:52 2005 UTC (13 years, 1 month ago) by ctreatma
Branch: MAIN
Changes since 1.15: +173 -31 lines
Diff to previous 1.15
Add the ability to associate dynamics/kinetics with reactions.  Dynamics is
a base class from which otgher dynamics inherit, e.g. Mass Acction (MADynamics).
There's a pattern involving parameter names, etc., that involves the modelEditor
and KahOM.Model so that editing is extensible, naming of parameters for
external simulators, etc.

Revision 1.15 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Mar 11 21:33:13 2005 UTC (13 years, 5 months ago) by efrank
Branch: MAIN
CVS Tags: preTreatmanDyn
Changes since 1.14: +219 -54 lines
Diff to previous 1.14
1. introduce Model as king of the hill rather than RecoElem.
2. migrations to follow
3. new modules for by-peg filtering
4. first stab at externalized app fwk
5. moved seed data factory

bunch of timing code still in this ...need to take out

Revision 1.14 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Feb 8 16:51:29 2005 UTC (13 years, 6 months ago) by efrank
Branch: MAIN
Changes since 1.13: +3 -90 lines
Diff to previous 1.13
move exporter to Cytoscape out to its own module.
get the isClass attrib up into the model editor for viewing/setting.

Revision 1.13 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Feb 4 21:39:24 2005 UTC (13 years, 6 months ago) by efrank
Branch: MAIN
Changes since 1.12: +32 -0 lines
Diff to previous 1.12
reaction:  isReversible()
stoichmatrix: twist around some naming.
recoelempanel: add drop-dwn command to delete all children of a node.

Revision 1.12 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Feb 1 21:02:03 2005 UTC (13 years, 6 months ago) by efrank
Branch: MAIN
Changes since 1.11: +6 -2 lines
Diff to previous 1.11
linux mac wxPy 2.5.1.5 ping pong

Revision 1.11 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Feb 1 16:06:14 2005 UTC (13 years, 6 months ago) by efrank
Branch: MAIN
Changes since 1.10: +9 -4 lines
Diff to previous 1.10
LoadFromLigand now takes connect string of db to load into.
KahDbAdmin now handles SEQEUENCE disparaty in DDL, ora vs postgres.
ModelEditor-more fixes for 2.5.1.5.
	now set selection after call to plugin
	other stuff too

Revision 1.10 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Jan 25 19:59:21 2005 UTC (13 years, 6 months ago) by efrank
Branch: MAIN
CVS Tags: pre-wxPython-2515-migration
Changes since 1.9: +1 -1 lines
Diff to previous 1.9
no longer even remember

Revision 1.9 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Jan 7 14:40:33 2005 UTC (13 years, 7 months ago) by efrank
Branch: MAIN
CVS Tags: post-st-migration, post-st-migration2
Changes since 1.8: +79 -59 lines
Diff to previous 1.8
migration to new schematools generated classes.
new chemdb.
factor chem out of seed data factory
imporved configuration of modeleditor

Revision 1.8 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Nov 11 20:59:45 2004 UTC (13 years, 9 months ago) by efrank
Branch: MAIN
CVS Tags: sc04-finalDay
Changes since 1.7: +0 -1 lines
Diff to previous 1.7
changes from the floor at SC.  wonder what they were...

Revision 1.7 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Nov 8 02:49:04 2004 UTC (13 years, 9 months ago) by efrank
Branch: MAIN
Changes since 1.6: +2 -1 lines
Diff to previous 1.6
catch more reaction funny formats.
again, throw them on the floor.
this time: wierd cases where A + A -> C rather than 2 A -> C

Revision 1.6 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Nov 2 20:50:17 2004 UTC (13 years, 9 months ago) by efrank
Branch: MAIN
CVS Tags: sc2004-3, sc2004-4
Changes since 1.5: +39 -0 lines
Diff to previous 1.5
rxpanel some debug prints.
recoElemPanel:  add ability to merge a copy onto a branch

Revision 1.5 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Nov 2 17:48:26 2004 UTC (13 years, 9 months ago) by efrank
Branch: MAIN
Changes since 1.4: +59 -2 lines
Diff to previous 1.4
eggbeater

Revision 1.4 - (view) (download) (as text) (annotate) - [select for diffs]
Sat Oct 23 18:55:47 2004 UTC (13 years, 10 months ago) by efrank
Branch: MAIN
CVS Tags: sc2004-0, sc2004-1, sc2004-2
Changes since 1.3: +61 -26 lines
Diff to previous 1.3
get shared editing going at basic level.

Revision 1.3 - (view) (download) (as text) (annotate) - [select for diffs]
Sat Oct 23 14:20:05 2004 UTC (13 years, 10 months ago) by efrank
Branch: MAIN
Changes since 1.2: +0 -3 lines
Diff to previous 1.2
RecoElem:
	add def arg to simply gatherReactions
StoichMat
	improved printing
RecoElempanel
	havffe no idea

Revision 1.2 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Oct 22 02:54:03 2004 UTC (13 years, 10 months ago) by efrank
Branch: MAIN
Changes since 1.1: +74 -0 lines
Diff to previous 1.1
MeAGMgr:'
	derivative of KahCatAGCfgMgr extended to handle messaging needed
	for shared editing

KahOM:
	deep copies of object model (in part)

ModelEditor:
	add shared editing over AG

Revision 1.1 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Oct 4 20:02:45 2004 UTC (13 years, 10 months ago) by efrank
Branch: MAIN
CVS Tags: PostMigrationFromPyGUI
Sucked out of PyGUI, tag MigrateToNewPackage.

hasta la vista, PyGUI

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