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Revision 1.34 - (view) (download) (as text) (annotate) - [select for diffs]
Sat Mar 8 18:33:51 2014 UTC (5 years, 8 months ago) by overbeek
Branch: MAIN
CVS Tags: HEAD
Changes since 1.33: +7 -3 lines
Diff to previous 1.33
allow more hits per contig

Revision 1.33 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Feb 21 18:50:39 2014 UTC (5 years, 8 months ago) by overbeek
Branch: MAIN
Changes since 1.32: +73 -15 lines
Diff to previous 1.32
add binary header to the binary file

Revision 1.32 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Feb 21 18:14:30 2014 UTC (5 years, 8 months ago) by overbeek
Branch: MAIN
Changes since 1.31: +3 -3 lines
Diff to previous 1.31
function index type change

Revision 1.31 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Feb 21 01:50:41 2014 UTC (5 years, 8 months ago) by olson
Branch: MAIN
Changes since 1.30: +5 -1 lines
Diff to previous 1.30
mac build fix, remove _BS.c from makefile

Revision 1.30 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Feb 20 19:46:07 2014 UTC (5 years, 8 months ago) by olson
Branch: MAIN
Changes since 1.29: +271 -64 lines
Diff to previous 1.29
Server version, other minor changes.

Revision 1.29 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Feb 20 19:44:40 2014 UTC (5 years, 8 months ago) by overbeek
Branch: MAIN
Changes since 1.28: +4 -4 lines
Diff to previous 1.28
fixes

Revision 1.28 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Feb 4 19:30:01 2014 UTC (5 years, 9 months ago) by olson
Branch: MAIN
Changes since 1.27: +3 -2 lines
Diff to previous 1.27
Added toupper to data read.

Revision 1.27 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Feb 3 17:02:44 2014 UTC (5 years, 9 months ago) by overbeek
Branch: MAIN
Changes since 1.26: +6 -0 lines
Diff to previous 1.26
write out table size to Data

Revision 1.26 - (view) (download) (as text) (annotate) - [select for diffs]
Sun Oct 27 13:57:11 2013 UTC (6 years ago) by overbeek
Branch: MAIN
Changes since 1.25: +7 -9 lines
Diff to previous 1.25
changes relating to weighting and ignoring it

Revision 1.25 - (view) (download) (as text) (annotate) - [select for diffs]
Sun Sep 15 17:35:04 2013 UTC (6 years, 2 months ago) by overbeek
Branch: MAIN
Changes since 1.24: +61 -20 lines
Diff to previous 1.24
added weighted kmers and order constraint

Revision 1.24 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Sep 13 13:33:53 2013 UTC (6 years, 2 months ago) by overbeek
Branch: MAIN
Changes since 1.23: +1 -1 lines
Diff to previous 1.23
spell stderr correctly

Revision 1.23 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Sep 13 13:30:17 2013 UTC (6 years, 2 months ago) by overbeek
Branch: MAIN
Changes since 1.22: +3 -3 lines
Diff to previous 1.22
write errors to stderr

Revision 1.22 - (view) (download) (as text) (annotate) - [select for diffs]
Sun Sep 1 18:29:58 2013 UTC (6 years, 2 months ago) by overbeek
Branch: MAIN
Changes since 1.21: +60 -17 lines
Diff to previous 1.21
max gap added

Revision 1.21 - (view) (download) (as text) (annotate) - [select for diffs]
Thu May 2 14:23:33 2013 UTC (6 years, 6 months ago) by overbeek
Branch: MAIN
Changes since 1.20: +4 -4 lines
Diff to previous 1.20
added some long longs

Revision 1.20 - (view) (download) (as text) (annotate) - [select for diffs]
Wed May 1 12:08:55 2013 UTC (6 years, 6 months ago) by overbeek
Branch: MAIN
Changes since 1.19: +21 -18 lines
Diff to previous 1.19
bad bug in gather_hits

Revision 1.19 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Feb 13 00:19:17 2013 UTC (6 years, 9 months ago) by overbeek
Branch: MAIN
Changes since 1.18: +1 -1 lines
Diff to previous 1.18
int to long issue

Revision 1.18 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Feb 13 00:03:32 2013 UTC (6 years, 9 months ago) by overbeek
Branch: MAIN
Changes since 1.17: +1 -1 lines
Diff to previous 1.17
reset hits between sequences

Revision 1.17 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Feb 12 23:48:57 2013 UTC (6 years, 9 months ago) by overbeek
Branch: MAIN
Changes since 1.16: +4 -15 lines
Diff to previous 1.16
reset hits between sequences

Revision 1.16 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Jan 18 13:22:57 2013 UTC (6 years, 9 months ago) by overbeek
Branch: MAIN
Changes since 1.15: +22 -17 lines
Diff to previous 1.15
I think this one may be stable for a while

Revision 1.15 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Jan 17 21:13:01 2013 UTC (6 years, 9 months ago) by overbeek
Branch: MAIN
Changes since 1.14: +4 -1 lines
Diff to previous 1.14
I think this one may be stable for a while

Revision 1.14 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Jan 17 16:50:29 2013 UTC (6 years, 9 months ago) by overbeek
Branch: MAIN
Changes since 1.13: +0 -1 lines
Diff to previous 1.13
get rid of extra output line

Revision 1.13 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Jan 17 16:46:05 2013 UTC (6 years, 9 months ago) by overbeek
Branch: MAIN
Changes since 1.12: +20 -7 lines
Diff to previous 1.12
debugging levels

Revision 1.12 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Jan 17 16:25:28 2013 UTC (6 years, 9 months ago) by overbeek
Branch: MAIN
Changes since 1.11: +7 -16 lines
Diff to previous 1.11
debugging levels

Revision 1.11 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Jan 17 15:43:06 2013 UTC (6 years, 9 months ago) by overbeek
Branch: MAIN
Changes since 1.10: +102 -171 lines
Diff to previous 1.10
argument passing

Revision 1.10 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Jan 14 22:48:18 2013 UTC (6 years, 10 months ago) by overbeek
Branch: MAIN
Changes since 1.9: +5 -0 lines
Diff to previous 1.9
minor changes to documentation

Revision 1.9 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Jan 14 22:40:00 2013 UTC (6 years, 10 months ago) by overbeek
Branch: MAIN
Changes since 1.8: +15 -23 lines
Diff to previous 1.8
minor changes to documentation

Revision 1.8 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Jan 14 22:10:28 2013 UTC (6 years, 10 months ago) by overbeek
Branch: MAIN
Changes since 1.7: +2 -1 lines
Diff to previous 1.7
minor changes to output

Revision 1.7 - (view) (download) (as text) (annotate) - [select for diffs]
Sun Jan 13 15:21:33 2013 UTC (6 years, 10 months ago) by overbeek
Branch: MAIN
Changes since 1.6: +7 -6 lines
Diff to previous 1.6
minor changes to output

Revision 1.6 - (view) (download) (as text) (annotate) - [select for diffs]
Sun Jan 13 06:37:11 2013 UTC (6 years, 10 months ago) by overbeek
Branch: MAIN
Changes since 1.5: +20 -4 lines
Diff to previous 1.5
process aa seq

Revision 1.5 - (view) (download) (as text) (annotate) - [select for diffs]
Sun Jan 13 06:17:34 2013 UTC (6 years, 10 months ago) by overbeek
Branch: MAIN
Changes since 1.4: +23 -20 lines
Diff to previous 1.4
OTU buffer works

Revision 1.4 - (view) (download) (as text) (annotate) - [select for diffs]
Sun Jan 13 05:31:28 2013 UTC (6 years, 10 months ago) by overbeek
Branch: MAIN
Changes since 1.3: +131 -10 lines
Diff to previous 1.3
started patching in OTU stuff

Revision 1.3 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Jan 9 20:24:55 2013 UTC (6 years, 10 months ago) by overbeek
Branch: MAIN
Changes since 1.2: +98 -52 lines
Diff to previous 1.2
numerous fixes

Revision 1.2 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Jan 9 00:31:40 2013 UTC (6 years, 10 months ago) by overbeek
Branch: MAIN
Changes since 1.1: +145 -133 lines
Diff to previous 1.1
Bob fixed bug in mem-mapping

Revision 1.1.1.1 - (view) (download) (as text) (annotate) - [select for diffs] (vendor branch)
Mon Jan 7 20:56:35 2013 UTC (6 years, 10 months ago) by overbeek
Branch: ross
CVS Tags: ross1
Changes since 1.1: +0 -0 lines
Diff to previous 1.1 , to next main 1.34
initial version of ross new stuff

Revision 1.1 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Jan 7 20:56:35 2013 UTC (6 years, 10 months ago) by overbeek
Branch: MAIN
Branch point for: ross
Initial revision

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