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revision 1.4, Tue Feb 6 21:25:52 2007 UTC revision 1.5, Thu Feb 15 16:19:15 2007 UTC
# Line 35  Line 35 
35  <object label="Species">  <object label="Species">
36    <scalar label="name" type="CHAR(250)" />    <scalar label="name" type="CHAR(250)" />
37    <object label="Genus" type="Genus" />    <object label="Genus" type="Genus" />
38      <object label="ScientificSpecies" type="Species" />
39      <object label="userflag1" type="INT" />
40      <object label="userflag2" type="INT" />
41      <object label="userflag3" type="INT" />
42      <object label="userflag4" type="INT" />
43  </object>  </object>
44    
45  <object label="Note">  <object label="Note">
# Line 42  Line 47 
47    <scalar label="description" type="CHAR(250)" />    <scalar label="description" type="CHAR(250)" />
48    <scalar label="timestamp" type="INT" />    <scalar label="timestamp" type="INT" />
49    <scalar label="voting" type="INT" />    <scalar label="voting" type="INT" />
50      <scalar label="confidence" type="INT" />
51      <object label="Strain" type="Genome" />
52  </object>  </object>
53    
54  <object label="STScluster">  <object label="STScluster">
# Line 55  Line 62 
62    <scalar label="score" type="INT" />    <scalar label="score" type="INT" />
63    <object label="STScluster" type="STScluster" />    <object label="STScluster" type="STScluster" />
64    <scalar label="STSvalue" type="FLOAT" />    <scalar label="STSvalue" type="FLOAT" />
   <object label="Genus" type="Genus" />  
65    <object label="Species" type="Species" />    <object label="Species" type="Species" />
66    <scalar label="strain" type="CHAR(125)" />    <scalar label="typeStrain" type="INT" />
67      <array>
68        <scalar label="strainAliases" type="CHAR(250)" />
69      </array>
70    <scalar label="gramStain" type="CHAR(125)" />    <scalar label="gramStain" type="CHAR(125)" />
71    <scalar label="taxid" type="CHAR(16)" />    <scalar label="taxid" type="CHAR(16)" />
72    <scalar label="ncNumber" type="CHAR(125)" />    <scalar label="ncNumber" type="CHAR(125)" />
# Line 66  Line 75 
75    <scalar label="CMRID" type="INT" />    <scalar label="CMRID" type="INT" />
76    <scalar label="carbon" type="CHAR(250)" />    <scalar label="carbon" type="CHAR(250)" />
77    <scalar label="chromosomeType" type="CHAR(250)" />    <scalar label="chromosomeType" type="CHAR(250)" />
   <!--  
       <object label="Contact" type="Contact" />  
       <array>  
       <object label="FundingOrganisation" type="Institution" />  
       </array>  
       <array>  
       <object label="GenomeDatabase" type="GenomeDatabase" />  
       </array>  
       <array>  
       <object label="Institution" type="Institution" />  
       </array>  
   -->  
   <array>  
     <object label="Notes" type="Note" />  
   </array>  
78    <scalar label="desease" type="INT" />    <scalar label="desease" type="INT" />
79    <scalar label="energy" type="CHAR(250)" />    <scalar label="energy" type="CHAR(250)" />
80    <scalar label="oxygen" type="CHAR(250)" />    <scalar label="oxygen" type="CHAR(250)" />
# Line 92  Line 86 
86    <scalar label="extremophile" type="CHAR(250)" />    <scalar label="extremophile" type="CHAR(250)" />
87    <scalar label="shape" type="CHAR(125)" />    <scalar label="shape" type="CHAR(125)" />
88    <scalar label="width" type="FLOAT" />    <scalar label="width" type="FLOAT" />
   <!--    <scalar label="genomeSize" type="INT" /> -->  
   <!--    <scalar label="noORFs" type="INT" /> -->  
89    <scalar label="motile" type="CHAR(125)" />    <scalar label="motile" type="CHAR(125)" />
90    <scalar label="numberChromosomes" type="INT" />    <scalar label="numberChromosomes" type="INT" />
91    <scalar label="totalReplicons" type="INT" />    <scalar label="totalReplicons" type="INT" />
# Line 103  Line 95 
95    <scalar label="InBergey" type="INT" />    <scalar label="InBergey" type="INT" />
96    <scalar label="InGOLD" type="INT" />    <scalar label="InGOLD" type="INT" />
97    <scalar label="InNCBI" type="INT" />    <scalar label="InNCBI" type="INT" />
98    <scalar label="InDMSZ" type="INT" />    <scalar label="InDSMZ" type="INT" />
99      <scalar label="InCCUG" type="INT" />
100    <scalar label="InGenomeData" type="INT" />    <scalar label="InGenomeData" type="INT" />
101    <scalar label="InSTS" type="INT" />    <scalar label="InSTS" type="INT" />
102    <!-- added from andi's schema from now on -->    <!-- added from andi's schema from now on -->

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