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revision 1.3, Thu Jan 18 15:46:58 2007 UTC revision 1.4, Tue Feb 6 21:25:52 2007 UTC
# Line 1  Line 1 
1  <?xml version="1.0" encoding="UTF-8"?>  <?xml version="1.0" encoding="UTF-8"?>
2    
3  <project_space label="GBergeyDB" superspace="GenDB">  <project_space label="GBBergeyDB" superspace="GenDB">
4    
5  <object label="Domain">  <object label="Domain">
6    <scalar label="name" type="CHAR(250)" />    <scalar label="name" type="CHAR(250)" />
# Line 37  Line 37 
37    <object label="Genus" type="Genus" />    <object label="Genus" type="Genus" />
38  </object>  </object>
39    
40    <object label="Note">
41      <scalar label="user" type="CHAR(250)" />
42      <scalar label="description" type="CHAR(250)" />
43      <scalar label="timestamp" type="INT" />
44      <scalar label="voting" type="INT" />
45    </object>
46    
47    <object label="STScluster">
48      <scalar label="number" type="INT" />
49      <scalar label="seqrepresentation" type="INT" />
50    </object>
51    
52    <object label="Genome">    <object label="Genome">
53      <scalar label="name" type="CHAR(250)" />      <scalar label="name" type="CHAR(250)" />
54      <scalar label="computedscore" type="INT" />
55      <scalar label="score" type="INT" />
56      <object label="STScluster" type="STScluster" />
57      <scalar label="STSvalue" type="FLOAT" />
58      <object label="Genus" type="Genus" />      <object label="Genus" type="Genus" />
59      <object label="Species" type="Species" />      <object label="Species" type="Species" />
60      <scalar label="strain" type="CHAR(125)" />      <scalar label="strain" type="CHAR(125)" />
# Line 62  Line 78 
78        <object label="Institution" type="Institution" />        <object label="Institution" type="Institution" />
79      </array>      </array>
80  -->  -->
81      <array>
82        <object label="Notes" type="Note" />
83      </array>
84      <scalar label="desease" type="INT" />      <scalar label="desease" type="INT" />
85      <scalar label="energy" type="CHAR(250)" />      <scalar label="energy" type="CHAR(250)" />
86      <scalar label="oxygen" type="CHAR(250)" />      <scalar label="oxygen" type="CHAR(250)" />
# Line 81  Line 100 
100      <scalar label="hxh" type="INT" />      <scalar label="hxh" type="INT" />
101      <scalar label="sequencingStatus" type="CHAR(250)" />      <scalar label="sequencingStatus" type="CHAR(250)" />
102      <scalar label="orderOfPublication" type="INT" />      <scalar label="orderOfPublication" type="INT" />
103  <!--    <object label="Publication" type="Publication" /> -->    <scalar label="InBergey" type="INT" />
104      <array>    <scalar label="InGOLD" type="INT" />
105        <scalar label="addFeatures" type="CHAR(250)" />    <scalar label="InNCBI" type="INT" />
106      </array>    <scalar label="InDMSZ" type="INT" />
107      <scalar label="InGenomeData" type="INT" />
108      <scalar label="InSTS" type="INT" />
109  <!-- added from andi's schema from now on -->  <!-- added from andi's schema from now on -->
110      <scalar label="genetic_code" type="CHAR(255)" /> <!-- Genetic code of an organism --> <!--  (describing translation and use of start codons) -->      <scalar label="genetic_code" type="CHAR(255)" /> <!-- Genetic code of an organism --> <!--  (describing translation and use of start codons) -->
111      <scalar label="estiGenomeSize" type="INT" />      <scalar label="estiGenomeSize" type="INT" />
112      <scalar label="cultivationStatus" type="CHAR(255)" /> <!-- Flag for the procedure of cultivating an organism, it can be e.g. easy, hard, mediumm, slow ... --> <!-- Flags have to be discussed -->      <scalar label="cultivationStatus" type="CHAR(255)" /> <!-- Flag for the procedure of cultivating an organism, it can be e.g. easy, hard, mediumm, slow ... --> <!-- Flags have to be discussed -->
113      <array>
114        <scalar label="addFeatures" type="CHAR(250)" />
115      </array>
116    </object>    </object>
117    
   
118  <object label="GenomeSequence">  <object label="GenomeSequence">
119      <object label="Genome" type="Genome" mandatory="1" /> <!--  Organism a sequence belongs to -->      <object label="Genome" type="Genome" mandatory="1" /> <!--  Organism a sequence belongs to -->
120      <scalar label="version" type="int" /> <!-- Version number of the sequence -->      <scalar label="version" type="int" /> <!-- Version number of the sequence -->
# Line 126  Line 149 
149  </object>  </object>
150    
151    
152    <object label="GenomeAlias">
153      <scalar label="name" type="CHAR(250)" />
154      <scalar label="scientificName" type="CHAR(250)" />
155    </object>
156    
157  <object label="Publication">  <object label="Publication">
158    <scalar label="pubmed" type="INT" />    <scalar label="pubmed" type="INT" />
159    <scalar label="url" type="CHAR(250)" />    <scalar label="url" type="CHAR(250)" />

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