[Bio] / FortyEightMeta / mg_postproc_taxa_sims.pl Repository:
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revision 1.8, Mon Jul 9 15:35:11 2007 UTC revision 1.9, Thu Sep 13 21:17:26 2007 UTC
# Line 176  Line 176 
176      &run_pipe(\*STDOUT, $correct_contigs_exe, "-orgdir", $orgdir, $fasta, $genome);      &run_pipe(\*STDOUT, $correct_contigs_exe, "-orgdir", $orgdir, $fasta, $genome);
177    
178      #      #
179        # Index contigs.
180        #
181    
182        &run_pipe(\*STDOUT, "$FIG_Config::bin/make_fasta_btree",
183                  "$orgdir/contigs",
184                  "$orgdir/contigs.btree",
185                  "$orgdir/contig_len.btree");
186    
187        #
188      # Copy sims.      # Copy sims.
189      #      #
190      copy($out_sims, "$orgdir/similarities");      copy($out_sims, "$orgdir/similarities");
# Line 236  Line 245 
245      &run_pipe($fh,      &run_pipe($fh,
246                $summarize_exe,                $summarize_exe,
247                "-orgdir", $orgdir,                "-orgdir", $orgdir,
248                  "-b", "$orgdir/taxa_summary_by_blast.btree",
249                $genome);                $genome);
250      close($fh);      close($fh);
251    

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