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revision 1.4, Tue Apr 10 20:54:14 2007 UTC revision 1.5, Thu Apr 12 20:44:32 2007 UTC
# Line 72  Line 72 
72      my $out_sims = "$jobdir/proc/$genome.sims";      my $out_sims = "$jobdir/proc/$genome.sims";
73    
74      #      #
75        # Use the btree-indexed NR from the data directory if possible.
76        #
77    
78        my $nr = "$FIG_Config::fortyeight_data/nr.btree";
79        my @nrarg;
80        if (-f $nr)
81        {
82            @nrarg = ('-nr', $nr);
83        }
84    
85    
86        #
87      # Verify we have the inputs we need for generating the orgdir.      # Verify we have the inputs we need for generating the orgdir.
88      #      #
89    
# Line 94  Line 106 
106                  -taxonomy => $taxonomy,                  -taxonomy => $taxonomy,
107                  -proj => $project,                  -proj => $project,
108                  -g => $genome,                  -g => $genome,
109                    @nrarg,
110                  $sims);                  $sims);
111    
112      my $pid = open(BOUT, "-|");      my $pid = open(BOUT, "-|");

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