[Bio] / FortyEightMeta / mg_postproc_taxa_sims.pl Repository:
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revision 1.10, Wed Oct 3 15:21:27 2007 UTC revision 1.11, Wed Oct 3 19:51:48 2007 UTC
# Line 66  Line 66 
66      #      #
67    
68      my $sims = "$jobdir/proc/sims.seed.raw";      my $sims = "$jobdir/proc/sims.seed.raw";
69        if (! -e $sims){
70      consolidate_sims("$jobdir/proc/sims.seed", $sims);      consolidate_sims("$jobdir/proc/sims.seed", $sims);
71        }
72    
73      my $gff = "$jobdir/proc/$genome.gff";      my $gff = "$jobdir/proc/$genome.gff";
74      my $out_sims = "$jobdir/proc/$genome.sims";      my $out_sims = "$jobdir/proc/$genome.sims";
# Line 265  Line 267 
267    
268      for my $name (qw(16s gg lsu ssu))      for my $name (qw(16s gg lsu ssu))
269      {      {
270          #my $dir = "$jobdir/proc/sims.$name";          my $dir = "$jobdir/proc/sims.$name";
271          my $sims = "$jobdir/proc/sims.$name.raw";          my $sims = "$jobdir/proc/sims.$name.raw";
272    
273          #consolidate_sims($dir, $sims);          if (! -e $sims){
274          #              consolidate_sims($dir, $sims);
275            }
276          # Now we can invoke the appropriate analysis.          # Now we can invoke the appropriate analysis.
277          #  
278    
279          my $besthits = "$jobdir/proc/taxa.$name.besthits";          my $besthits = "$jobdir/proc/taxa.$name.besthits";
280          my $allhits =  "$jobdir/proc/taxa.$name.allhits";          my $allhits =  "$jobdir/proc/taxa.$name.allhits";

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