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revision 1.1, Mon Sep 24 18:02:35 2007 UTC revision 1.3, Thu Sep 27 19:48:15 2007 UTC
# Line 16  Line 16 
16    
17  # this defines the number of sequences for each job.  # this defines the number of sequences for each job.
18  use constant BIOBLASTA => 10000;  use constant BIOBLASTA => 10000;
 #use constant BIOINTEL  => 2000;  
19  use constant BIOINTEL  => 2000;  use constant BIOINTEL  => 2000;
20    
21  my $STAGE = "sims";  my $STAGE = "sims";
# Line 39  Line 38 
38  my $proc = "$jobdir/proc";  my $proc = "$jobdir/proc";
39  chdir($proc);  chdir($proc);
40    
41  #my $fasta = $meta->get_metadata("preprocess.fasta_file");  my $fasta = $meta->get_metadata("preprocess.fasta_file");
42  my $fasta = "$proc/164.fa";  
43    
44  my $tempf = "/vol/metagenome-48-hour/Data/tblastx-template";  my $tempf = "/vol/metagenome-48-hour/Data/tblastx-template";
45  #my $tempf = "/home/mkubal/TimeLogic_Templates/tblastx-template";  #my $tempf = "/home/mkubal/TimeLogic_Templates/tblastx-template";
# Line 101  Line 100 
100                  $jobs_not_done = 1;                  $jobs_not_done = 1;
101              }              }
102          }          }
103            sleep(60);
104      }      }
105    
106     #once all jobs finish, parse results and write to $jobdir/proc     #once all jobs finish, parse results and write to $jobdir/proc

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