[Bio] / FortyEightMeta / mg_compute_sims_on_timelogic.pl Repository:
ViewVC logotype

Diff of /FortyEightMeta/mg_compute_sims_on_timelogic.pl

Parent Directory Parent Directory | Revision Log Revision Log | View Patch Patch

revision 1.4, Mon Oct 1 20:42:51 2007 UTC revision 1.5, Wed Oct 3 15:42:05 2007 UTC
# Line 40  Line 40 
40  my $fasta = $meta->get_metadata("preprocess.fasta_file");  my $fasta = $meta->get_metadata("preprocess.fasta_file");
41    
42    
43  my $tempf = "/vol/metagenome-48-hour/Data/tblastx-template";  my $tempf;
 #my $tempf = "/home/mkubal/TimeLogic_Templates/tblastx-template";  
44    
45  my @databases = ("nr_2007_0208","16s","lsu","gg");  my @databases = ("nr_2007_0208","16s","lsu","gg");
46    
47  foreach my $db (@databases){  foreach my $db (@databases){
48    
49        if($db){ $tempf = "/vol/metagenome-48-hour/Data/tblastx-template-nr";}
50        else{$tempf = "/vol/metagenome-48-hour/Data/tblastx-template-others";}
51    
52      my $fa=raelib->read_fasta("$fasta"); # this is a generic method of reading a fasta file into a ref to a hash      my $fa=raelib->read_fasta("$fasta"); # this is a generic method of reading a fasta file into a ref to a hash
53      my @keys=keys %$fa;      my @keys=keys %$fa;
54    

Legend:
Removed from v.1.4  
changed lines
  Added in v.1.5

MCS Webmaster
ViewVC Help
Powered by ViewVC 1.0.3