[Bio] / FortyEightMeta Repository:
ViewVC logotype

Index of /FortyEightMeta

Files shown:58 (Hide 17 dead files)
Sticky Tag:


File Rev. Age Author Last log entry
 Parent Directory        
ExpandSims.pm  1.1  12 years  olson  initial checking of metagenome 48 stuff
MGDB.pm  1.1  11 years  olson  Add the .pm files for rel2.
Makefile  1.12  11 years  olson  Commit of initial MGRAST2 code.
README  1.2  11 years  olson  Development checkin of new metagenomics RAST pipeline.
SimDB.pm  1.2  11 years  olson  fix default pathfix default path
SimStatusDB.pm  1.3  11 years  olson  Add connect/disconnect to SimStatusDB. Disconnect while sims run.
TaxStr.pm  1.2  11 years  olson  Development checkin of new metagenomics RAST pipeline.
check_jobs_mg.pl  1.18  11 years  olson  add mgrast2 check
find_broken_jobs.pl  1.1  11 years  olson  Development checkin of new metagenomics RAST pipeline.
find_jobs_with_short_seqs.pl  1.1  11 years  olson  Development checkin of new metagenomics RAST pipeline.
load_sim_data.pl  1.4  11 years  olson  Loader tweaks.
load_sim_data_noncached.pl  1.1  11 years  olson  Rename sim data loader scripts.
load_tax.pl  1.3  11 years  olson  Updates to mgrast sim loader.
merge_repaired_job_results.pl  1.1  11 years  olson  Development checkin of new metagenomics RAST pipeline.
mg_check_sims.pl  1.2  11 years  olson  Replace the MLDBM/DB_File sim status database with a postgres version.
mg_chunk_sims.pl  1.2  11 years  olson  Development checkin of new metagenomics RAST pipeline.
mg_compute_sims.pl  1.5  11 years  olson  Add connect/disconnect to SimStatusDB. Disconnect while sims run.
mg_compute_sims_on_timelogic.pl  1.9  12 years  mkubal  -priority 5, records SOC job to meta.xml
mg_create_db_indexes.pl  1.1  11 years  olson  Commit of initial MGRAST2 code.
mg_create_seed_org.pl  1.1  11 years  olson  Development checkin of new metagenomics RAST pipeline.
mg_export.pl  1.1  12 years  olson  new file
mg_figfam.pl  1.2  12 years  olson  Some minor mg assignment fixes
mg_gen_subsystem_tax.pl  1.1  11 years  olson  Development checkin of new metagenomics RAST pipeline.
mg_load_done.pl  1.3  11 years  olson  Replace the MLDBM/DB_File sim status database with a postgres version.
mg_load_sims.pl  1.3  11 years  olson  Replace the MLDBM/DB_File sim status database with a postgres version.
mg_load_sims_file.pl  1.2  11 years  olson  Commit of initial MGRAST2 code.
mg_load_tax_db.pl  1.2  11 years  olson  Commit of initial MGRAST2 code.
mg_norm_16s.pl  1.1  11 years  olson  Commit of initial MGRAST2 code.
mg_norm_euro.pl  1.1  11 years  olson  Commit of initial MGRAST2 code.
mg_norm_greengenes.pl  1.1  11 years  olson  Commit of initial MGRAST2 code.
mg_norm_silva.pl  1.1  11 years  olson  Development checkin of new metagenomics RAST pipeline.
mg_port_job.pl  1.2  11 years  olson  die if job already loaded
mg_postproc_taxa_sims.pl  1.13  11 years  olson  Development checkin of new metagenomics RAST pipeline.
mg_preprocess.pl  1.16  11 years  olson  Replace the MLDBM/DB_File sim status database with a postgres version.
mg_sims.pl  1.11  11 years  olson  Replace the MLDBM/DB_File sim status database with a postgres version.
mg_sims_done.pl  1.1  12 years  olson  initial checking of metagenome 48 stuff
pull_sge_accounting_for_jobs.pl  1.1  11 years  olson  Development checkin of new metagenomics RAST pipeline.
recover_broken_job.pl  1.5  11 years  redwards  adding a tag to meta xml and allowing the dot directory
resume_after_fixed_fasta.pl  1.2  11 years  redwards  just adding a test that the file was found
summarize_mgrast_taxa.pl  1.1  12 years  olson  Summarize all taxa info for all jobs in the mgrast.
tax-schema.sql  1.4  11 years  olson  Commit of initial MGRAST2 code.
ClusterStage.pm (dead) No revisions exist on mgrast_rel_2008_0919
SGE.pm (dead) No revisions exist on mgrast_rel_2008_0919
copy_metagenome.pl (dead) No revisions exist on mgrast_rel_2008_0919
finish_job.pl (dead) No revisions exist on mgrast_rel_2008_0919
format_all_public_metagenomes.pl (dead) No revisions exist on mgrast_rel_2008_0919
get_sim_status.pl (dead) No revisions exist on mgrast_rel_2008_0919
load_data.pl (dead) No revisions exist on mgrast_rel_2008_0919
load_data_cached.pl (dead) No revisions exist on mgrast_rel_2008_0919
mg_create_histogram_images.pl (dead) No revisions exist on mgrast_rel_2008_0919
mg_sims_to_gff_and_gbk.pl (dead) No revisions exist on mgrast_rel_2008_0919
mg_to_gbk.pl (dead) No revisions exist on mgrast_rel_2008_0919
mg_upgrade_preprocess.pl (dead) No revisions exist on mgrast_rel_2008_0919
mg_upgrade_sims.pl (dead) No revisions exist on mgrast_rel_2008_0919
reload_job_sims.pl (dead) No revisions exist on mgrast_rel_2008_0919
remake_sims_tables.pl (dead) No revisions exist on mgrast_rel_2008_0919
renumber_split_move_blastx.pl (dead) No revisions exist on mgrast_rel_2008_0919
reset_sims_load.pl (dead) No revisions exist on mgrast_rel_2008_0919

MCS Webmaster
ViewVC Help
Powered by ViewVC 1.0.3